noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.2.1.4.6) Plots of Abundance.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.2.1.4.6.2) Iterating over all combinations of grouping variables

(1.2.1.4.6.2.1) Grouping variables Sample.type

(1.2.1.4.6.2.2) Iterating over Abundance. profile sorting order

(1.2.1.4.6.2.2.1) Abundance. profile sorting order: average abundance

(1.2.1.4.6.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.2.1.4.6.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling

(1.2.1.4.6.2.2.2.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.2.1.1.0) Table 98. Data table used for plots. Data grouped by Sample.type. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.2.2.1.1.0-3234966eb1e.1.2.1.4.6.2.2.2.1.1.csv

(1.2.1.4.6.2.2.2.1.1.1) Widget 103. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type. Click to see HTML widget file in full window: ./1.2.1.4.6.2.2.2.1.1.1-323624bb660Dynamic.Pivot.Table.html

(1.2.1.4.6.2.2.2.1.1.1) Widget 104. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type. Click to see HTML widget file in full window: ./1.2.1.4.6.2.2.2.1.1.1-3231d41396aDynamic.Pivot.Table.html

(1.2.1.4.6.2.2.2.1.1.1) Table 99. Summary table. Data grouped by Sample.type. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.2.2.1.1.1-3232ae45bba.1.2.1.4.6.2.2.2.1.1.csv

(1.2.1.4.6.2.2.2.1.1.1) Figure 361. Abundance. Data grouped by Sample.type. bar_stacked plot. Image file: plots/32367a360df.svg.

(1.2.1.4.6.2.2.2.1.1.1) Figure 362. Abundance. Data grouped by Sample.type. bar (sample mean) plot. Image file: plots/3236cf72361.svg.

(1.2.1.4.6.2.2.2.1.1.1) Figure 363. Abundance. Data grouped by Sample.type. violin plot. Image file: plots/323505a8eda.svg.

(1.2.1.4.6.2.2.2.1.1.1) Figure 364. Abundance. Data grouped by Sample.type. boxplot plot. Image file: plots/323789529ed.svg.

(1.2.1.4.6.2.2.2.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.2.1.2.1) Figure 365. Abundance. Data grouped by Sample.type. bar (sample mean) plot. Image file: plots/3239747192.svg.

(1.2.1.4.6.2.2.2.1.2.1) Figure 366. Abundance. Data grouped by Sample.type. violin plot. Image file: plots/32374b02740.svg.

(1.2.1.4.6.2.2.2.1.2.1) Figure 367. Abundance. Data grouped by Sample.type. boxplot plot. Image file: plots/323691cf029.svg.

(1.2.1.4.6.2.2.2.2) dodged plots. Iterating over orientation and, optionally, scaling

(1.2.1.4.6.2.2.2.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.2.2.1.1) Figure 368. Abundance. Data grouped by Sample.type. bar (sample mean) plot. Image file: plots/323325a9de7.svg.

(1.2.1.4.6.2.2.2.2.1.1) Figure 369. Abundance. Data grouped by Sample.type. violin plot. Image file: plots/323f478de4.svg.

(1.2.1.4.6.2.2.2.2.1.1) Figure 370. Abundance. Data grouped by Sample.type. boxplot plot. Image file: plots/3236cea4951.svg.

(1.2.1.4.6.2.2.2.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.2.2.2.1) Figure 371. Abundance. Data grouped by Sample.type. bar (sample mean) plot. Image file: plots/3233449167e.svg.

(1.2.1.4.6.2.2.2.2.2.1) Figure 372. Abundance. Data grouped by Sample.type. violin plot. Image file: plots/323208f03dc.svg.

(1.2.1.4.6.2.2.2.2.2.1) Figure 373. Abundance. Data grouped by Sample.type. boxplot plot. Image file: plots/323456de286.svg.

(1.2.1.4.6.2.2.3) Abundance. profile sorting order: Ranking by 'stabsel' method

(1.2.1.4.6.2.2.4) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.2.1.4.6.2.2.4.1) faceted plots. Iterating over orientation and, optionally, scaling

(1.2.1.4.6.2.2.4.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.4.1.1.0) Table 100. Data table used for plots. Data grouped by Sample.type. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.2.4.1.1.0-3235cfe06bf.1.2.1.4.6.2.2.4.1.1.csv

(1.2.1.4.6.2.2.4.1.1.1) Widget 105. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type. Click to see HTML widget file in full window: ./1.2.1.4.6.2.2.4.1.1.1-323148cbf02Dynamic.Pivot.Table.html

(1.2.1.4.6.2.2.4.1.1.1) Widget 106. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type. Click to see HTML widget file in full window: ./1.2.1.4.6.2.2.4.1.1.1-32339f89503Dynamic.Pivot.Table.html

(1.2.1.4.6.2.2.4.1.1.1) Table 101. Summary table. Data grouped by Sample.type. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.2.4.1.1.1-3233fc83807.1.2.1.4.6.2.2.4.1.1.csv

(1.2.1.4.6.2.2.4.1.1.1) Figure 374. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar_stacked plot. Image file: plots/323734d750f.svg.

(1.2.1.4.6.2.2.4.1.1.1) Figure 375. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/323655cb2d2.svg.

(1.2.1.4.6.2.2.4.1.1.1) Figure 376. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3233c440e66.svg.

(1.2.1.4.6.2.2.4.1.1.1) Figure 377. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323577cbcbb.svg.

(1.2.1.4.6.2.2.4.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.4.1.2.1) Figure 378. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/3235afc0b74.svg.

(1.2.1.4.6.2.2.4.1.2.1) Figure 379. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3236e0e20fa.svg.

(1.2.1.4.6.2.2.4.1.2.1) Figure 380. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323766b0752.svg.

(1.2.1.4.6.2.2.4.2) dodged plots. Iterating over orientation and, optionally, scaling

(1.2.1.4.6.2.2.4.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.4.2.1.1) Figure 381. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/32371fd0ff3.svg.

(1.2.1.4.6.2.2.4.2.1.1) Figure 382. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3234384790a.svg.

(1.2.1.4.6.2.2.4.2.1.1) Figure 383. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/32358f9362d.svg.

(1.2.1.4.6.2.2.4.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.4.2.2.1) Figure 384. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/323289e560d.svg.

(1.2.1.4.6.2.2.4.2.2.1) Figure 385. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3232b36ca68.svg.

(1.2.1.4.6.2.2.4.2.2.1) Figure 386. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/3233cbb5c3b.svg.

(1.2.1.4.6.2.3) Grouping variables Sample.type,age.quant

(1.2.1.4.6.2.4) Iterating over Abundance. profile sorting order

(1.2.1.4.6.2.4.1) Abundance. profile sorting order: average abundance

(1.2.1.4.6.2.4.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.2.1.4.6.2.4.2.1) faceted plots. Iterating over orientation and, optionally, scaling

(1.2.1.4.6.2.4.2.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.4.2.1.1.0) Table 102. Data table used for plots. Data grouped by Sample.type,age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.4.2.1.1.0-323645c2ad5.1.2.1.4.6.2.4.2.1.1.csv

(1.2.1.4.6.2.4.2.1.1.1) Widget 107. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type,age.quant. Click to see HTML widget file in full window: ./1.2.1.4.6.2.4.2.1.1.1-3235491427eDynamic.Pivot.Table.html

(1.2.1.4.6.2.4.2.1.1.1) Widget 108. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type,age.quant. Click to see HTML widget file in full window: ./1.2.1.4.6.2.4.2.1.1.1-32377598235Dynamic.Pivot.Table.html

(1.2.1.4.6.2.4.2.1.1.1) Table 103. Summary table. Data grouped by Sample.type,age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.4.2.1.1.1-323615d6a5c.1.2.1.4.6.2.4.2.1.1.csv

(1.2.1.4.6.2.4.2.1.1.1) Figure 387. Abundance. Data grouped by Sample.type,age.quant. bar_stacked plot. Image file: plots/3233e608fcc.svg.

(1.2.1.4.6.2.4.2.1.1.1) Figure 388. Abundance. Data grouped by Sample.type,age.quant. bar (sample mean) plot. Image file: plots/3232d28df9f.svg.

(1.2.1.4.6.2.4.2.1.1.1) Figure 389. Abundance. Data grouped by Sample.type,age.quant. violin plot. Image file: plots/323626e435b.svg.

(1.2.1.4.6.2.4.2.1.1.1) Figure 390. Abundance. Data grouped by Sample.type,age.quant. boxplot plot. Image file: plots/3237153910.svg.

(1.2.1.4.6.2.4.2.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.4.2.1.2.1) Figure 391. Abundance. Data grouped by Sample.type,age.quant. bar (sample mean) plot. Image file: plots/3237f983591.svg.