noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.2.1.4.6) Plots of Abundance.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.2.1.4.6.2) Iterating over all combinations of grouping variables
(1.2.1.4.6.2.1) Grouping variables Sample.type
(1.2.1.4.6.2.2) Iterating over Abundance. profile sorting order
(1.2.1.4.6.2.2.1) Abundance. profile sorting order: average abundance
(1.2.1.4.6.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.2.1.4.6.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.2.1.4.6.2.2.2.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.2.1.1.0) Table 98. Data table used for plots. Data grouped by Sample.type. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.2.2.1.1.0-3234966eb1e.1.2.1.4.6.2.2.2.1.1.csv

.record.id Sample.type feature Abundance
SB1 control Bacteroides.Otu0001 1.546e-02
SB10 control Bacteroides.Otu0001 1.567e-02
SB11 patient Bacteroides.Otu0001 2.143e-02
SB12 control Bacteroides.Otu0001 0.000e+00
SB13 control Bacteroides.Otu0001 4.313e-02
SB14 control Bacteroides.Otu0001 2.798e-02
SB15 control Bacteroides.Otu0001 5.819e-02
SB16 patient Bacteroides.Otu0001 1.738e-01
SB17 patient Bacteroides.Otu0001 6.084e-02
SB18 patient Bacteroides.Otu0001 7.129e-03
SB19 control Bacteroides.Otu0001 4.404e-03
SB21 control Bacteroides.Otu0001 9.430e-02
SB22 patient Bacteroides.Otu0001 1.800e-01
SB23 patient Bacteroides.Otu0001 3.120e-01
SB24 control Bacteroides.Otu0001 6.268e-02
SB25 control Bacteroides.Otu0001 6.138e-02
SB26 control Bacteroides.Otu0001 5.936e-02
SB28 patient Bacteroides.Otu0001 0.000e+00
SB29 patient Bacteroides.Otu0001 1.037e-01
SB3 control Bacteroides.Otu0001 2.902e-03
SB30 patient Bacteroides.Otu0001 1.891e-01
SB31 control Bacteroides.Otu0001 1.585e-01
SB32 control Bacteroides.Otu0001 8.035e-02
SB33 control Bacteroides.Otu0001 2.751e-02
SB34 patient Bacteroides.Otu0001 3.325e-02
SB35 patient Bacteroides.Otu0001 5.347e-01
SB36 patient Bacteroides.Otu0001 1.941e-01
SB38 patient Bacteroides.Otu0001 1.512e-01
SB39 patient Bacteroides.Otu0001 4.380e-02
SB4 patient Bacteroides.Otu0001 1.179e-01
SB40 control Bacteroides.Otu0001 1.492e-01
SB41 patient Bacteroides.Otu0001 2.363e-01
SB42 patient Bacteroides.Otu0001 0.000e+00
SB43 patient Bacteroides.Otu0001 1.247e-01
SB44 patient Bacteroides.Otu0001 0.000e+00
SB45 control Bacteroides.Otu0001 0.000e+00
SB5 patient Bacteroides.Otu0001 5.829e-02
SB6 patient Bacteroides.Otu0001 5.265e-02
SB7 control Bacteroides.Otu0001 3.935e-02
SB8 patient Bacteroides.Otu0001 9.063e-02
SB9 patient Bacteroides.Otu0001 0.000e+00
SB1 control Bacteroides.Otu2520 1.330e-01
SB10 control Bacteroides.Otu2520 5.961e-03
SB11 patient Bacteroides.Otu2520 1.473e-02
SB12 control Bacteroides.Otu2520 0.000e+00
SB13 control Bacteroides.Otu2520 0.000e+00
SB14 control Bacteroides.Otu2520 1.289e-03
SB15 control Bacteroides.Otu2520 4.378e-02
SB16 patient Bacteroides.Otu2520 1.862e-02
SB17 patient Bacteroides.Otu2520 5.531e-03
SB18 patient Bacteroides.Otu2520 1.638e-01
SB19 control Bacteroides.Otu2520 1.233e-03
SB21 control Bacteroides.Otu2520 0.000e+00
SB22 patient Bacteroides.Otu2520 2.610e-02
SB23 patient Bacteroides.Otu2520 4.034e-04
SB24 control Bacteroides.Otu2520 1.951e-02
SB25 control Bacteroides.Otu2520 2.664e-02
SB26 control Bacteroides.Otu2520 2.417e-01
SB28 patient Bacteroides.Otu2520 7.120e-02
SB29 patient Bacteroides.Otu2520 0.000e+00
SB3 control Bacteroides.Otu2520 4.145e-03
SB30 patient Bacteroides.Otu2520 5.047e-04
SB31 control Bacteroides.Otu2520 9.282e-02
SB32 control Bacteroides.Otu2520 3.158e-02
SB33 control Bacteroides.Otu2520 1.085e-02
SB34 patient Bacteroides.Otu2520 1.003e-01
SB35 patient Bacteroides.Otu2520 1.525e-02
SB36 patient Bacteroides.Otu2520 4.566e-02
SB38 patient Bacteroides.Otu2520 8.620e-03
SB39 patient Bacteroides.Otu2520 1.440e-01
SB4 patient Bacteroides.Otu2520 1.715e-01
SB40 control Bacteroides.Otu2520 6.748e-02
SB41 patient Bacteroides.Otu2520 1.504e-01
SB42 patient Bacteroides.Otu2520 4.602e-01
SB43 patient Bacteroides.Otu2520 2.912e-03
SB44 patient Bacteroides.Otu2520 0.000e+00
SB45 control Bacteroides.Otu2520 0.000e+00
SB5 patient Bacteroides.Otu2520 2.179e-04
SB6 patient Bacteroides.Otu2520 0.000e+00
SB7 control Bacteroides.Otu2520 1.756e-01
SB8 patient Bacteroides.Otu2520 4.540e-03
SB9 patient Bacteroides.Otu2520 3.786e-04
SB1 control Prevotella.Otu1987 0.000e+00
SB10 control Prevotella.Otu1987 2.009e-01
SB11 patient Prevotella.Otu1987 0.000e+00
SB12 control Prevotella.Otu1987 0.000e+00
SB13 control Prevotella.Otu1987 0.000e+00
SB14 control Prevotella.Otu1987 2.937e-01
SB15 control Prevotella.Otu1987 0.000e+00
SB16 patient Prevotella.Otu1987 0.000e+00
SB17 patient Prevotella.Otu1987 4.680e-01
SB18 patient Prevotella.Otu1987 0.000e+00
SB19 control Prevotella.Otu1987 1.362e-01
SB21 control Prevotella.Otu1987 0.000e+00
SB22 patient Prevotella.Otu1987 0.000e+00
SB23 patient Prevotella.Otu1987 0.000e+00
SB24 control Prevotella.Otu1987 0.000e+00
SB25 control Prevotella.Otu1987 0.000e+00
SB26 control Prevotella.Otu1987 0.000e+00
SB28 patient Prevotella.Otu1987 0.000e+00
SB29 patient Prevotella.Otu1987 0.000e+00
SB3 control Prevotella.Otu1987 7.731e-02
SB30 patient Prevotella.Otu1987 0.000e+00
SB31 control Prevotella.Otu1987 7.326e-05
SB32 control Prevotella.Otu1987 0.000e+00
SB33 control Prevotella.Otu1987 0.000e+00
SB34 patient Prevotella.Otu1987 0.000e+00
SB35 patient Prevotella.Otu1987 0.000e+00
SB36 patient Prevotella.Otu1987 4.186e-02
SB38 patient Prevotella.Otu1987 1.068e-01
SB39 patient Prevotella.Otu1987 0.000e+00
SB4 patient Prevotella.Otu1987 0.000e+00
SB40 control Prevotella.Otu1987 0.000e+00
SB41 patient Prevotella.Otu1987 0.000e+00
SB42 patient Prevotella.Otu1987 0.000e+00
SB43 patient Prevotella.Otu1987 9.979e-02
SB44 patient Prevotella.Otu1987 0.000e+00
SB45 control Prevotella.Otu1987 3.318e-01
SB5 patient Prevotella.Otu1987 6.537e-04
SB6 patient Prevotella.Otu1987 0.000e+00
SB7 control Prevotella.Otu1987 0.000e+00
SB8 patient Prevotella.Otu1987 0.000e+00
SB9 patient Prevotella.Otu1987 1.515e-03
SB1 control Bacteroides.Otu2654 5.001e-03
SB10 control Bacteroides.Otu2654 8.516e-05
SB11 patient Bacteroides.Otu2654 0.000e+00
SB12 control Bacteroides.Otu2654 0.000e+00
SB13 control Bacteroides.Otu2654 0.000e+00
SB14 control Bacteroides.Otu2654 1.289e-04
SB15 control Bacteroides.Otu2654 2.261e-02
SB16 patient Bacteroides.Otu2654 1.076e-02
SB17 patient Bacteroides.Otu2654 2.277e-02
SB18 patient Bacteroides.Otu2654 4.125e-01
SB19 control Bacteroides.Otu2654 7.046e-04
SB21 control Bacteroides.Otu2654 0.000e+00
SB22 patient Bacteroides.Otu2654 8.868e-02
SB23 patient Bacteroides.Otu2654 6.280e-02
SB24 control Bacteroides.Otu2654 2.467e-02
SB25 control Bacteroides.Otu2654 2.131e-04
SB26 control Bacteroides.Otu2654 1.612e-03
SB28 patient Bacteroides.Otu2654 0.000e+00
SB29 patient Bacteroides.Otu2654 0.000e+00
SB3 control Bacteroides.Otu2654 8.290e-04
SB30 patient Bacteroides.Otu2654 2.510e-01
SB31 control Bacteroides.Otu2654 1.201e-02
SB32 control Bacteroides.Otu2654 7.741e-03
SB33 control Bacteroides.Otu2654 6.891e-04
SB34 patient Bacteroides.Otu2654 2.251e-03
SB35 patient Bacteroides.Otu2654 8.069e-02
SB36 patient Bacteroides.Otu2654 4.947e-03
SB38 patient Bacteroides.Otu2654 3.430e-02
SB39 patient Bacteroides.Otu2654 1.159e-02
SB4 patient Bacteroides.Otu2654 6.090e-02
SB40 control Bacteroides.Otu2654 1.892e-02
SB41 patient Bacteroides.Otu2654 3.439e-02
SB42 patient Bacteroides.Otu2654 1.443e-03
SB43 patient Bacteroides.Otu2654 1.718e-02
SB44 patient Bacteroides.Otu2654 2.746e-04
SB45 control Bacteroides.Otu2654 0.000e+00
SB5 patient Bacteroides.Otu2654 0.000e+00
SB6 patient Bacteroides.Otu2654 7.416e-04
SB7 control Bacteroides.Otu2654 6.369e-04
SB8 patient Bacteroides.Otu2654 3.027e-03
SB9 patient Bacteroides.Otu2654 0.000e+00
SB1 control Bacteroides.Otu0863 4.092e-03
SB10 control Bacteroides.Otu0863 8.260e-03
SB11 patient Bacteroides.Otu0863 2.397e-01
SB12 control Bacteroides.Otu0863 0.000e+00
SB13 control Bacteroides.Otu0863 0.000e+00
SB14 control Bacteroides.Otu0863 2.708e-03
SB15 control Bacteroides.Otu0863 6.964e-03
SB16 patient Bacteroides.Otu0863 0.000e+00
SB17 patient Bacteroides.Otu0863 1.672e-03
SB18 patient Bacteroides.Otu0863 2.976e-03
SB19 control Bacteroides.Otu0863 5.284e-04
SB21 control Bacteroides.Otu0863 0.000e+00
SB22 patient Bacteroides.Otu0863 7.678e-04
SB23 patient Bacteroides.Otu0863 1.493e-02
SB24 control Bacteroides.Otu0863 1.420e-02
SB25 control Bacteroides.Otu0863 7.992e-02
SB26 control Bacteroides.Otu0863 9.401e-03
SB28 patient Bacteroides.Otu0863 3.934e-04
SB29 patient Bacteroides.Otu0863 0.000e+00
SB3 control Bacteroides.Otu0863 1.658e-03
SB30 patient Bacteroides.Otu0863 2.907e-02
SB31 control Bacteroides.Otu0863 5.201e-03
SB32 control Bacteroides.Otu0863 1.084e-02
SB33 control Bacteroides.Otu0863 7.925e-03
SB34 patient Bacteroides.Otu0863 1.600e-01
SB35 patient Bacteroides.Otu0863 3.011e-02
SB36 patient Bacteroides.Otu0863 2.511e-02
SB38 patient Bacteroides.Otu0863 2.756e-02
SB39 patient Bacteroides.Otu0863 1.836e-02
SB4 patient Bacteroides.Otu0863 1.809e-03
SB40 control Bacteroides.Otu0863 8.925e-03
SB41 patient Bacteroides.Otu0863 1.372e-03
SB42 patient Bacteroides.Otu0863 2.575e-02
SB43 patient Bacteroides.Otu0863 3.300e-03
SB44 patient Bacteroides.Otu0863 4.201e-02
SB45 control Bacteroides.Otu0863 0.000e+00

(1.2.1.4.6.2.2.2.1.1.1) Widget 103. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type. Click to see HTML widget file in full window: ./1.2.1.4.6.2.2.2.1.1.1-323624bb660Dynamic.Pivot.Table.html

(1.2.1.4.6.2.2.2.1.1.1) Widget 104. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type. Click to see HTML widget file in full window: ./1.2.1.4.6.2.2.2.1.1.1-3231d41396aDynamic.Pivot.Table.html

(1.2.1.4.6.2.2.2.1.1.1) Table 99. Summary table. Data grouped by Sample.type. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.2.2.1.1.1-3232ae45bba.1.2.1.4.6.2.2.2.1.1.csv

feature Sample.type mean sd median incidence
Bacteroides.Otu0001 control 5.002e-02 4.713e-02 4.124e-02 0.88889
Bacteroides.Otu0001 patient 1.168e-01 1.255e-01 9.063e-02 0.82609
Bacteroides.Otu2520 control 4.754e-02 7.015e-02 1.518e-02 0.77778
Bacteroides.Otu2520 patient 6.108e-02 1.054e-01 1.473e-02 0.86957
Prevotella.Otu1987 control 5.778e-02 1.088e-01 0.000e+00 0.33333
Prevotella.Otu1987 patient 3.124e-02 9.994e-02 0.000e+00 0.26087
Bacteroides.Otu2654 control 5.326e-03 8.407e-03 6.968e-04 0.77778
Bacteroides.Otu2654 patient 4.783e-02 9.677e-02 1.076e-02 0.78261
Bacteroides.Otu0863 control 1.046e-02 1.864e-02 6.083e-03 0.77778
Bacteroides.Otu0863 patient 3.229e-02 5.790e-02 1.493e-02 0.86957
Faecalibacterium.Otu0067 control 2.566e-02 2.389e-02 2.040e-02 0.94444
Faecalibacterium.Otu0067 patient 1.768e-02 1.932e-02 1.166e-02 0.95652
Bacteroides.Otu2038 control 1.280e-02 3.189e-02 2.419e-03 0.83333
Bacteroides.Otu2038 patient 2.623e-02 6.465e-02 3.601e-03 0.86957
Alistipes.Otu2508 control 2.027e-02 3.055e-02 7.646e-03 0.66667
Alistipes.Otu2508 patient 1.774e-02 4.589e-02 5.195e-04 0.52174
Bacteroides.Otu0848 control 1.089e-02 2.184e-02 1.310e-03 0.72222
Bacteroides.Otu0848 patient 2.252e-02 3.495e-02 6.558e-03 0.86957
Bacteroides.Otu0929 control 7.699e-03 9.621e-03 4.511e-03 0.83333
Bacteroides.Otu0929 patient 2.297e-02 4.878e-02 3.724e-03 0.73913
Bacteroides.Otu2431 control 1.680e-02 2.110e-02 6.948e-03 0.77778
Bacteroides.Otu2431 patient 1.553e-02 2.341e-02 7.537e-03 0.82609
Parabacteroides.Otu1736 control 4.485e-03 4.986e-03 3.900e-03 0.83333
Parabacteroides.Otu1736 patient 2.509e-02 9.916e-02 1.328e-04 0.56522
Ruminococcus.Otu1859 control 3.263e-02 5.916e-02 5.089e-03 0.72222
Ruminococcus.Otu1859 patient 1.516e-03 5.680e-03 0.000e+00 0.26087
Bacteroides.Otu2065 control 7.217e-03 1.371e-02 0.000e+00 0.33333
Bacteroides.Otu2065 patient 2.112e-02 8.207e-02 0.000e+00 0.21739
Bacteroides.Otu2625 control 5.941e-03 1.570e-02 8.037e-04 0.66667
Bacteroides.Otu2625 patient 1.951e-02 4.503e-02 6.678e-04 0.65217
Prevotella.Otu1994 control 2.646e-02 6.088e-02 0.000e+00 0.22222
Prevotella.Otu1994 patient 3.362e-03 1.356e-02 0.000e+00 0.08696
Alistipes.Otu1466 control 1.627e-02 4.028e-02 2.699e-04 0.50000
Alistipes.Otu1466 patient 1.086e-02 1.787e-02 2.576e-03 0.52174
Escherichia_Shigella.Otu2393 control 9.903e-03 3.953e-02 3.853e-04 0.61111
Escherichia_Shigella.Otu2393 patient 1.408e-02 4.403e-02 0.000e+00 0.39130
Bacteroides.Otu1201 control 4.442e-03 7.397e-03 2.154e-03 0.72222
Bacteroides.Otu1201 patient 1.796e-02 4.252e-02 4.950e-03 0.82609
Blautia.Otu2475 control 1.882e-02 4.365e-02 7.955e-03 1.00000
Blautia.Otu2475 patient 6.579e-03 9.572e-03 2.046e-03 0.91304
Erysipelotrichaceae_incertae_sedis.Otu0818 control 6.510e-04 1.330e-03 7.077e-05 0.50000
Erysipelotrichaceae_incertae_sedis.Otu0818 patient 1.994e-02 8.001e-02 9.525e-04 0.69565
Bacteroides.Otu0661 control 7.237e-03 9.749e-03 3.579e-03 0.72222
Bacteroides.Otu0661 patient 1.387e-02 2.320e-02 3.919e-03 0.73913
Bacteroides.Otu0069 control 6.033e-03 5.392e-03 4.877e-03 0.77778
Bacteroides.Otu0069 patient 1.411e-02 1.696e-02 1.076e-02 0.82609
Clostridium_XI.Otu1804 control 7.941e-03 8.436e-03 6.903e-03 0.94444
Clostridium_XI.Otu1804 patient 1.197e-02 2.513e-02 2.170e-03 0.82609
Bacteroides.Otu2765 control 4.757e-03 7.410e-03 1.284e-03 0.72222
Bacteroides.Otu2765 patient 1.268e-02 1.724e-02 5.045e-03 0.91304
Bacteroides.Otu0480 control 9.209e-03 2.546e-02 0.000e+00 0.33333
Bacteroides.Otu0480 patient 9.011e-03 3.377e-02 0.000e+00 0.21739
Bacteroides.Otu0786 control 1.253e-03 2.608e-03 0.000e+00 0.38889
Bacteroides.Otu0786 patient 1.362e-02 5.207e-02 0.000e+00 0.47826
Bacteroides.Otu0006 control 5.089e-03 6.353e-03 3.693e-03 0.83333
Bacteroides.Otu0006 patient 1.051e-02 9.565e-03 7.294e-03 0.82609
Akkermansia.Otu1935 control 3.002e-03 6.251e-03 0.000e+00 0.38889
Akkermansia.Otu1935 patient 1.025e-02 3.615e-02 0.000e+00 0.34783
Bacteroides.Otu2481 control 1.520e-02 6.431e-02 0.000e+00 0.27778
Bacteroides.Otu2481 patient 0.000e+00 0.000e+00 0.000e+00 0.00000
Bacteroides.Otu2437 control 1.099e-02 2.383e-02 9.540e-04 0.66667
Bacteroides.Otu2437 patient 3.057e-03 6.170e-03 0.000e+00 0.47826
Faecalibacterium.Otu0751 control 6.820e-03 6.094e-03 4.375e-03 0.88889
Faecalibacterium.Otu0751 patient 5.336e-03 7.840e-03 3.377e-03 0.86957
Bacteroides.Otu1726 control 1.187e-02 5.019e-02 0.000e+00 0.16667
Bacteroides.Otu1726 patient 0.000e+00 0.000e+00 0.000e+00 0.00000
Clostridium_XlVa.Otu0236 control 6.075e-03 1.055e-02 2.085e-03 0.94444
Clostridium_XlVa.Otu0236 patient 4.005e-03 5.116e-03 2.152e-03 0.95652
Prevotella.Otu1633 control 4.933e-03 1.103e-02 0.000e+00 0.38889
Prevotella.Otu1633 patient 4.798e-03 1.274e-02 0.000e+00 0.43478
Dorea.Otu1142 control 6.256e-03 6.597e-03 3.989e-03 0.94444
Dorea.Otu1142 patient 3.746e-03 7.510e-03 7.597e-04 0.69565
Bacteroides.Otu1624 control 2.800e-03 7.494e-03 0.000e+00 0.38889
Bacteroides.Otu1624 patient 6.359e-03 2.512e-02 0.000e+00 0.34783
Bifidobacterium.Otu1244 control 1.033e-02 4.238e-02 0.000e+00 0.44444
Bifidobacterium.Otu1244 patient 3.762e-04 1.735e-03 0.000e+00 0.08696
Bacteroides.Otu2343 control 7.165e-04 1.612e-03 0.000e+00 0.44444
Bacteroides.Otu2343 patient 7.836e-03 2.709e-02 4.426e-05 0.52174
Prevotella.Otu2602 control 8.172e-03 1.967e-02 0.000e+00 0.33333
Prevotella.Otu2602 patient 1.987e-03 4.695e-03 0.000e+00 0.21739
Sutterella.Otu0171 control 7.049e-03 2.434e-02 0.000e+00 0.27778
Sutterella.Otu0171 patient 2.772e-03 7.848e-03 0.000e+00 0.30435
Bacteroides.Otu2104 control 2.444e-03 3.805e-03 6.177e-04 0.66667
Bacteroides.Otu2104 patient 6.132e-03 8.432e-03 2.170e-03 0.82609
Lactobacillus.Otu0959 control 1.012e-02 4.271e-02 0.000e+00 0.11111
Lactobacillus.Otu0959 patient 4.939e-05 2.369e-04 0.000e+00 0.04348
Megamonas.Otu2657 control 9.015e-03 3.076e-02 0.000e+00 0.16667
Megamonas.Otu2657 patient 9.060e-04 4.321e-03 0.000e+00 0.08696
Prevotella.Otu1803 control 6.550e-03 1.514e-02 0.000e+00 0.33333
Prevotella.Otu1803 patient 2.414e-03 6.438e-03 0.000e+00 0.26087
Lachnospiraceae.Otu0220 control 6.197e-03 9.495e-03 4.598e-03 0.94444
Lachnospiraceae.Otu0220 patient 2.338e-03 4.937e-03 3.035e-04 0.60870
Lachnospiraceae.Otu2512 control 8.089e-03 7.484e-03 6.105e-03 0.88889
Lachnospiraceae.Otu2512 patient 7.134e-04 1.544e-03 1.328e-04 0.60870
Ruminococcaceae.Otu1504 control 6.865e-03 1.999e-02 0.000e+00 0.22222
Ruminococcaceae.Otu1504 patient 1.619e-03 7.748e-03 0.000e+00 0.08696
Clostridiales.Otu1597 control 5.664e-03 1.415e-02 0.000e+00 0.38889
Clostridiales.Otu1597 patient 2.330e-03 1.001e-02 0.000e+00 0.17391
Prevotella.Otu0634 control 4.195e-03 9.120e-03 6.534e-05 0.55556
Prevotella.Otu0634 patient 3.395e-03 8.853e-03 0.000e+00 0.21739
Bacteroides.Otu0877 control 2.323e-03 4.360e-03 1.019e-03 0.72222
Bacteroides.Otu0877 patient 4.673e-03 9.931e-03 1.180e-03 0.78261
Parabacteroides.Otu1378 control 1.584e-03 3.171e-03 3.250e-04 0.77778
Parabacteroides.Otu1378 patient 4.950e-03 8.585e-03 1.089e-04 0.52174
Lachnospiraceae.Otu2222 control 6.180e-03 9.342e-03 2.669e-03 0.88889
Lachnospiraceae.Otu2222 patient 1.298e-03 2.368e-03 0.000e+00 0.43478
Clostridium_XI.Otu2681 control 1.108e-03 1.390e-03 3.722e-04 0.72222
Clostridium_XI.Otu2681 patient 5.255e-03 2.114e-02 0.000e+00 0.43478
Bacteroides.Otu1565 control 6.383e-03 2.442e-02 3.663e-05 0.50000
Bacteroides.Otu1565 patient 1.118e-03 3.293e-03 0.000e+00 0.34783
Gemmiger.Otu0907 control 5.594e-03 5.095e-03 4.928e-03 0.83333
Gemmiger.Otu0907 patient 1.639e-03 2.581e-03 3.015e-04 0.56522
Enterococcus.Otu1019 control 3.328e-03 1.308e-02 0.000e+00 0.22222
Enterococcus.Otu1019 patient 3.367e-03 1.493e-02 0.000e+00 0.26087
Bacteroides.Otu2216 control 1.199e-03 2.663e-03 0.000e+00 0.33333
Bacteroides.Otu2216 patient 4.819e-03 1.703e-02 0.000e+00 0.17391
Lachnospiraceae.Otu0898 control 5.574e-03 2.115e-02 3.538e-05 0.50000
Lachnospiraceae.Otu0898 patient 1.387e-03 2.479e-03 4.038e-04 0.69565
Megamonas.Otu1877 control 5.677e-03 2.408e-02 0.000e+00 0.05556
Megamonas.Otu1877 patient 1.235e-03 5.923e-03 0.000e+00 0.04348
Ruminococcus.Otu0422 control 7.200e-03 2.098e-02 0.000e+00 0.27778
Ruminococcus.Otu0422 patient 0.000e+00 0.000e+00 0.000e+00 0.00000
Sutterella.Otu1997 control 2.687e-03 6.135e-03 1.343e-04 0.50000
Sutterella.Otu1997 patient 3.454e-03 1.218e-02 0.000e+00 0.21739
Clostridium_IV.Otu1864 control 5.366e-03 9.037e-03 5.352e-04 0.61111
Clostridium_IV.Otu1864 patient 1.203e-03 4.015e-03 0.000e+00 0.26087
Prevotella.Otu1319 control 5.167e-03 1.297e-02 0.000e+00 0.27778
Prevotella.Otu1319 patient 1.105e-03 3.174e-03 0.000e+00 0.21739
Phascolarctobacterium.Otu1814 control 4.088e-03 9.770e-03 0.000e+00 0.22222
Phascolarctobacterium.Otu1814 patient 1.932e-03 4.753e-03 0.000e+00 0.39130
Prevotella.Otu0738 control 1.575e-04 3.486e-04 0.000e+00 0.22222
Prevotella.Otu0738 patient 4.889e-03 2.035e-02 0.000e+00 0.13043
Lachnospiracea_incertae_sedis.Otu1152 control 4.558e-03 7.373e-03 1.869e-03 0.88889
Lachnospiracea_incertae_sedis.Otu1152 patient 1.411e-03 3.185e-03 0.000e+00 0.47826
Lachnospiracea_incertae_sedis.Otu0113 control 4.628e-03 4.744e-03 4.314e-03 0.94444
Lachnospiracea_incertae_sedis.Otu0113 patient 9.713e-04 1.389e-03 3.859e-04 0.65217
Roseburia.Otu1051 control 2.588e-03 3.673e-03 1.840e-03 0.94444
Roseburia.Otu1051 patient 2.491e-03 4.068e-03 8.581e-04 0.73913
Klebsiella.Otu1452 control 5.117e-03 2.150e-02 0.000e+00 0.16667
Klebsiella.Otu1452 patient 3.720e-04 1.428e-03 0.000e+00 0.21739
Blautia.Otu2495 control 4.311e-03 7.419e-03 2.099e-03 0.88889
Blautia.Otu2495 patient 9.913e-04 1.475e-03 3.035e-04 0.65217
Prevotella.Otu1563 control 3.396e-03 6.604e-03 0.000e+00 0.27778
Prevotella.Otu1563 patient 1.473e-03 3.956e-03 0.000e+00 0.21739
Bacteroides.Otu2120 control 1.664e-03 2.682e-03 8.408e-04 0.83333
Bacteroides.Otu2120 patient 2.811e-03 3.991e-03 9.707e-04 0.65217
Bacteroides.Otu2375 control 1.343e-03 1.992e-03 8.292e-04 0.72222
Bacteroides.Otu2375 patient 3.049e-03 2.975e-03 2.303e-03 0.82609
Lachnospiraceae.Otu0790 control 1.920e-03 3.294e-03 7.615e-04 0.88889
Lachnospiraceae.Otu0790 patient 2.508e-03 3.446e-03 1.029e-03 0.69565
Parabacteroides.Otu1107 control 9.455e-04 1.354e-03 3.872e-04 0.66667
Parabacteroides.Otu1107 patient 3.251e-03 7.330e-03 0.000e+00 0.34783
Bacteroidales.Otu1168 control 4.023e-04 1.444e-03 0.000e+00 0.27778
Bacteroidales.Otu1168 patient 3.488e-03 1.160e-02 0.000e+00 0.34783
Lachnospiraceae.Otu2599 control 1.449e-03 1.517e-03 8.462e-04 0.94444
Lachnospiraceae.Otu2599 patient 2.570e-03 5.043e-03 6.030e-04 0.78261
Prevotella.Otu0773 control 3.349e-03 9.602e-03 0.000e+00 0.27778
Prevotella.Otu0773 patient 1.025e-03 3.635e-03 0.000e+00 0.17391
Bacteroides.Otu2534 control 3.830e-06 1.625e-05 0.000e+00 0.05556
Bacteroides.Otu2534 patient 3.549e-03 1.288e-02 0.000e+00 0.26087
Lachnospiracea_incertae_sedis.Otu0778 control 2.174e-03 2.208e-03 1.642e-03 0.77778
Lachnospiracea_incertae_sedis.Otu0778 patient 1.813e-03 3.516e-03 3.708e-04 0.56522
Bacteria.Otu0435 control 0.000e+00 0.000e+00 0.000e+00 0.00000
Bacteria.Otu0435 patient 3.485e-03 1.671e-02 0.000e+00 0.04348
Alistipes.Otu0529 control 2.542e-03 4.959e-03 3.877e-04 0.55556
Alistipes.Otu0529 patient 1.489e-03 3.090e-03 0.000e+00 0.21739
Lachnospiracea_incertae_sedis.Otu1990 control 3.538e-03 2.436e-03 3.744e-03 0.94444
Lachnospiracea_incertae_sedis.Otu1990 patient 6.134e-04 1.978e-03 0.000e+00 0.39130
Bacteroides.Otu2460 control 7.456e-04 1.284e-03 2.760e-04 0.61111
Bacteroides.Otu2460 patient 2.787e-03 4.168e-03 6.726e-04 0.69565
Streptococcus.Otu0749 control 4.183e-03 1.775e-02 0.000e+00 0.05556
Streptococcus.Otu0749 patient 7.059e-05 3.156e-04 0.000e+00 0.08696
Prevotella.Otu0882 control 2.009e-03 6.926e-03 0.000e+00 0.27778
Prevotella.Otu0882 patient 1.758e-03 4.462e-03 0.000e+00 0.17391
Oscillibacter.Otu0154 control 1.744e-03 2.055e-03 6.181e-04 0.77778
Oscillibacter.Otu0154 patient 1.926e-03 3.131e-03 5.047e-04 0.73913
Lachnospiraceae.Otu0272 control 3.524e-03 6.857e-03 6.105e-04 0.83333
Lachnospiraceae.Otu0272 patient 5.243e-04 1.754e-03 0.000e+00 0.43478
Blautia.Otu0620 control 1.372e-03 1.429e-03 1.009e-03 0.88889
Blautia.Otu0620 patient 2.165e-03 5.266e-03 4.856e-04 0.78261
Lachnospiracea_incertae_sedis.Otu2549 control 3.346e-03 7.104e-03 1.820e-03 0.88889
Lachnospiracea_incertae_sedis.Otu2549 patient 5.937e-04 1.443e-03 0.000e+00 0.43478
Roseburia.Otu2084 control 2.090e-03 1.507e-03 1.702e-03 0.94444
Roseburia.Otu2084 patient 1.507e-03 1.917e-03 8.237e-04 0.69565
Lachnospiraceae.Otu0875 control 1.801e-03 1.316e-03 1.645e-03 1.00000
Lachnospiraceae.Otu0875 patient 1.684e-03 3.408e-03 2.019e-04 0.60870
Bacteroides.Otu2416 control 6.226e-04 9.021e-04 3.109e-04 0.61111
Bacteroides.Otu2416 patient 2.589e-03 5.389e-03 1.009e-03 0.69565
Ruminococcaceae.Otu0064 control 3.833e-03 9.592e-03 0.000e+00 0.27778
Ruminococcaceae.Otu0064 patient 2.216e-05 8.372e-05 0.000e+00 0.08696
Bacteroides.Otu1411 control 2.204e-03 5.126e-03 2.173e-04 0.66667
Bacteroides.Otu1411 patient 1.251e-03 3.727e-03 0.000e+00 0.47826
Lachnospiracea_incertae_sedis.Otu2746 control 3.061e-03 3.531e-03 1.719e-03 0.94444
Lachnospiracea_incertae_sedis.Otu2746 patient 5.556e-04 1.653e-03 0.000e+00 0.39130
Ruminococcus.Otu1429 control 2.571e-03 3.675e-03 1.021e-03 0.72222
Ruminococcus.Otu1429 patient 9.005e-04 2.007e-03 0.000e+00 0.30435
Prevotella.Otu2666 control 5.942e-04 2.426e-03 0.000e+00 0.16667
Prevotella.Otu2666 patient 2.434e-03 1.166e-02 0.000e+00 0.08696
Bacteroides.Otu1669 control 1.649e-03 2.148e-03 5.003e-04 0.72222
Bacteroides.Otu1669 patient 1.601e-03 2.547e-03 3.859e-04 0.65217

(1.2.1.4.6.2.2.2.1.1.1) Figure 361. Abundance. Data grouped by Sample.type. bar_stacked plot. Image file: plots/32367a360df.svg.

(1.2.1.4.6.2.2.2.1.1.1) Figure 362. Abundance. Data grouped by Sample.type. bar (sample mean) plot. Image file: plots/3236cf72361.svg.

(1.2.1.4.6.2.2.2.1.1.1) Figure 363. Abundance. Data grouped by Sample.type. violin plot. Image file: plots/323505a8eda.svg.

(1.2.1.4.6.2.2.2.1.1.1) Figure 364. Abundance. Data grouped by Sample.type. boxplot plot. Image file: plots/323789529ed.svg.

(1.2.1.4.6.2.2.2.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.2.1.2.1) Figure 365. Abundance. Data grouped by Sample.type. bar (sample mean) plot. Image file: plots/3239747192.svg.

(1.2.1.4.6.2.2.2.1.2.1) Figure 366. Abundance. Data grouped by Sample.type. violin plot. Image file: plots/32374b02740.svg.

(1.2.1.4.6.2.2.2.1.2.1) Figure 367. Abundance. Data grouped by Sample.type. boxplot plot. Image file: plots/323691cf029.svg.

(1.2.1.4.6.2.2.2.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.2.1.4.6.2.2.2.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.2.2.1.1) Figure 368. Abundance. Data grouped by Sample.type. bar (sample mean) plot. Image file: plots/323325a9de7.svg.

(1.2.1.4.6.2.2.2.2.1.1) Figure 369. Abundance. Data grouped by Sample.type. violin plot. Image file: plots/323f478de4.svg.

(1.2.1.4.6.2.2.2.2.1.1) Figure 370. Abundance. Data grouped by Sample.type. boxplot plot. Image file: plots/3236cea4951.svg.

(1.2.1.4.6.2.2.2.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.2.2.2.1) Figure 371. Abundance. Data grouped by Sample.type. bar (sample mean) plot. Image file: plots/3233449167e.svg.

(1.2.1.4.6.2.2.2.2.2.1) Figure 372. Abundance. Data grouped by Sample.type. violin plot. Image file: plots/323208f03dc.svg.

(1.2.1.4.6.2.2.2.2.2.1) Figure 373. Abundance. Data grouped by Sample.type. boxplot plot. Image file: plots/323456de286.svg.

(1.2.1.4.6.2.2.3) Abundance. profile sorting order: Ranking by 'stabsel' method
(1.2.1.4.6.2.2.4) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.2.1.4.6.2.2.4.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.2.1.4.6.2.2.4.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.4.1.1.0) Table 100. Data table used for plots. Data grouped by Sample.type. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.2.4.1.1.0-3235cfe06bf.1.2.1.4.6.2.2.4.1.1.csv

.record.id Sample.type feature Abundance
SB1 control Bacteroides.Otu0001 1.546e-02
SB10 control Bacteroides.Otu0001 1.567e-02
SB11 patient Bacteroides.Otu0001 2.143e-02
SB12 control Bacteroides.Otu0001 0.000e+00
SB13 control Bacteroides.Otu0001 4.313e-02
SB14 control Bacteroides.Otu0001 2.798e-02
SB15 control Bacteroides.Otu0001 5.819e-02
SB16 patient Bacteroides.Otu0001 1.738e-01
SB17 patient Bacteroides.Otu0001 6.084e-02
SB18 patient Bacteroides.Otu0001 7.129e-03
SB19 control Bacteroides.Otu0001 4.404e-03
SB21 control Bacteroides.Otu0001 9.430e-02
SB22 patient Bacteroides.Otu0001 1.800e-01
SB23 patient Bacteroides.Otu0001 3.120e-01
SB24 control Bacteroides.Otu0001 6.268e-02
SB25 control Bacteroides.Otu0001 6.138e-02
SB26 control Bacteroides.Otu0001 5.936e-02
SB28 patient Bacteroides.Otu0001 0.000e+00
SB29 patient Bacteroides.Otu0001 1.037e-01
SB3 control Bacteroides.Otu0001 2.902e-03
SB30 patient Bacteroides.Otu0001 1.891e-01
SB31 control Bacteroides.Otu0001 1.585e-01
SB32 control Bacteroides.Otu0001 8.035e-02
SB33 control Bacteroides.Otu0001 2.751e-02
SB34 patient Bacteroides.Otu0001 3.325e-02
SB35 patient Bacteroides.Otu0001 5.347e-01
SB36 patient Bacteroides.Otu0001 1.941e-01
SB38 patient Bacteroides.Otu0001 1.512e-01
SB39 patient Bacteroides.Otu0001 4.380e-02
SB4 patient Bacteroides.Otu0001 1.179e-01
SB40 control Bacteroides.Otu0001 1.492e-01
SB41 patient Bacteroides.Otu0001 2.363e-01
SB42 patient Bacteroides.Otu0001 0.000e+00
SB43 patient Bacteroides.Otu0001 1.247e-01
SB44 patient Bacteroides.Otu0001 0.000e+00
SB45 control Bacteroides.Otu0001 0.000e+00
SB5 patient Bacteroides.Otu0001 5.829e-02
SB6 patient Bacteroides.Otu0001 5.265e-02
SB7 control Bacteroides.Otu0001 3.935e-02
SB8 patient Bacteroides.Otu0001 9.063e-02
SB9 patient Bacteroides.Otu0001 0.000e+00
SB1 control Bacteroides.Otu2520 1.330e-01
SB10 control Bacteroides.Otu2520 5.961e-03
SB11 patient Bacteroides.Otu2520 1.473e-02
SB12 control Bacteroides.Otu2520 0.000e+00
SB13 control Bacteroides.Otu2520 0.000e+00
SB14 control Bacteroides.Otu2520 1.289e-03
SB15 control Bacteroides.Otu2520 4.378e-02
SB16 patient Bacteroides.Otu2520 1.862e-02
SB17 patient Bacteroides.Otu2520 5.531e-03
SB18 patient Bacteroides.Otu2520 1.638e-01
SB19 control Bacteroides.Otu2520 1.233e-03
SB21 control Bacteroides.Otu2520 0.000e+00
SB22 patient Bacteroides.Otu2520 2.610e-02
SB23 patient Bacteroides.Otu2520 4.034e-04
SB24 control Bacteroides.Otu2520 1.951e-02
SB25 control Bacteroides.Otu2520 2.664e-02
SB26 control Bacteroides.Otu2520 2.417e-01
SB28 patient Bacteroides.Otu2520 7.120e-02
SB29 patient Bacteroides.Otu2520 0.000e+00
SB3 control Bacteroides.Otu2520 4.145e-03
SB30 patient Bacteroides.Otu2520 5.047e-04
SB31 control Bacteroides.Otu2520 9.282e-02
SB32 control Bacteroides.Otu2520 3.158e-02
SB33 control Bacteroides.Otu2520 1.085e-02
SB34 patient Bacteroides.Otu2520 1.003e-01
SB35 patient Bacteroides.Otu2520 1.525e-02
SB36 patient Bacteroides.Otu2520 4.566e-02
SB38 patient Bacteroides.Otu2520 8.620e-03
SB39 patient Bacteroides.Otu2520 1.440e-01
SB4 patient Bacteroides.Otu2520 1.715e-01
SB40 control Bacteroides.Otu2520 6.748e-02
SB41 patient Bacteroides.Otu2520 1.504e-01
SB42 patient Bacteroides.Otu2520 4.602e-01
SB43 patient Bacteroides.Otu2520 2.912e-03
SB44 patient Bacteroides.Otu2520 0.000e+00
SB45 control Bacteroides.Otu2520 0.000e+00
SB5 patient Bacteroides.Otu2520 2.179e-04
SB6 patient Bacteroides.Otu2520 0.000e+00
SB7 control Bacteroides.Otu2520 1.756e-01
SB8 patient Bacteroides.Otu2520 4.540e-03
SB9 patient Bacteroides.Otu2520 3.786e-04
SB1 control Prevotella.Otu1987 0.000e+00
SB10 control Prevotella.Otu1987 2.009e-01
SB11 patient Prevotella.Otu1987 0.000e+00
SB12 control Prevotella.Otu1987 0.000e+00
SB13 control Prevotella.Otu1987 0.000e+00
SB14 control Prevotella.Otu1987 2.937e-01
SB15 control Prevotella.Otu1987 0.000e+00
SB16 patient Prevotella.Otu1987 0.000e+00
SB17 patient Prevotella.Otu1987 4.680e-01
SB18 patient Prevotella.Otu1987 0.000e+00
SB19 control Prevotella.Otu1987 1.362e-01
SB21 control Prevotella.Otu1987 0.000e+00
SB22 patient Prevotella.Otu1987 0.000e+00
SB23 patient Prevotella.Otu1987 0.000e+00
SB24 control Prevotella.Otu1987 0.000e+00
SB25 control Prevotella.Otu1987 0.000e+00
SB26 control Prevotella.Otu1987 0.000e+00
SB28 patient Prevotella.Otu1987 0.000e+00
SB29 patient Prevotella.Otu1987 0.000e+00
SB3 control Prevotella.Otu1987 7.731e-02
SB30 patient Prevotella.Otu1987 0.000e+00
SB31 control Prevotella.Otu1987 7.326e-05
SB32 control Prevotella.Otu1987 0.000e+00
SB33 control Prevotella.Otu1987 0.000e+00
SB34 patient Prevotella.Otu1987 0.000e+00
SB35 patient Prevotella.Otu1987 0.000e+00
SB36 patient Prevotella.Otu1987 4.186e-02
SB38 patient Prevotella.Otu1987 1.068e-01
SB39 patient Prevotella.Otu1987 0.000e+00
SB4 patient Prevotella.Otu1987 0.000e+00
SB40 control Prevotella.Otu1987 0.000e+00
SB41 patient Prevotella.Otu1987 0.000e+00
SB42 patient Prevotella.Otu1987 0.000e+00
SB43 patient Prevotella.Otu1987 9.979e-02
SB44 patient Prevotella.Otu1987 0.000e+00
SB45 control Prevotella.Otu1987 3.318e-01
SB5 patient Prevotella.Otu1987 6.537e-04
SB6 patient Prevotella.Otu1987 0.000e+00
SB7 control Prevotella.Otu1987 0.000e+00
SB8 patient Prevotella.Otu1987 0.000e+00
SB9 patient Prevotella.Otu1987 1.515e-03
SB1 control Bacteroides.Otu2654 5.001e-03
SB10 control Bacteroides.Otu2654 8.516e-05
SB11 patient Bacteroides.Otu2654 0.000e+00
SB12 control Bacteroides.Otu2654 0.000e+00
SB13 control Bacteroides.Otu2654 0.000e+00
SB14 control Bacteroides.Otu2654 1.289e-04
SB15 control Bacteroides.Otu2654 2.261e-02
SB16 patient Bacteroides.Otu2654 1.076e-02
SB17 patient Bacteroides.Otu2654 2.277e-02
SB18 patient Bacteroides.Otu2654 4.125e-01
SB19 control Bacteroides.Otu2654 7.046e-04
SB21 control Bacteroides.Otu2654 0.000e+00
SB22 patient Bacteroides.Otu2654 8.868e-02
SB23 patient Bacteroides.Otu2654 6.280e-02
SB24 control Bacteroides.Otu2654 2.467e-02
SB25 control Bacteroides.Otu2654 2.131e-04
SB26 control Bacteroides.Otu2654 1.612e-03
SB28 patient Bacteroides.Otu2654 0.000e+00
SB29 patient Bacteroides.Otu2654 0.000e+00
SB3 control Bacteroides.Otu2654 8.290e-04
SB30 patient Bacteroides.Otu2654 2.510e-01
SB31 control Bacteroides.Otu2654 1.201e-02
SB32 control Bacteroides.Otu2654 7.741e-03
SB33 control Bacteroides.Otu2654 6.891e-04
SB34 patient Bacteroides.Otu2654 2.251e-03
SB35 patient Bacteroides.Otu2654 8.069e-02
SB36 patient Bacteroides.Otu2654 4.947e-03
SB38 patient Bacteroides.Otu2654 3.430e-02
SB39 patient Bacteroides.Otu2654 1.159e-02
SB4 patient Bacteroides.Otu2654 6.090e-02
SB40 control Bacteroides.Otu2654 1.892e-02
SB41 patient Bacteroides.Otu2654 3.439e-02
SB42 patient Bacteroides.Otu2654 1.443e-03
SB43 patient Bacteroides.Otu2654 1.718e-02
SB44 patient Bacteroides.Otu2654 2.746e-04
SB45 control Bacteroides.Otu2654 0.000e+00
SB5 patient Bacteroides.Otu2654 0.000e+00
SB6 patient Bacteroides.Otu2654 7.416e-04
SB7 control Bacteroides.Otu2654 6.369e-04
SB8 patient Bacteroides.Otu2654 3.027e-03
SB9 patient Bacteroides.Otu2654 0.000e+00
SB1 control Bacteroides.Otu0863 4.092e-03
SB10 control Bacteroides.Otu0863 8.260e-03
SB11 patient Bacteroides.Otu0863 2.397e-01
SB12 control Bacteroides.Otu0863 0.000e+00
SB13 control Bacteroides.Otu0863 0.000e+00
SB14 control Bacteroides.Otu0863 2.708e-03
SB15 control Bacteroides.Otu0863 6.964e-03
SB16 patient Bacteroides.Otu0863 0.000e+00
SB17 patient Bacteroides.Otu0863 1.672e-03
SB18 patient Bacteroides.Otu0863 2.976e-03
SB19 control Bacteroides.Otu0863 5.284e-04
SB21 control Bacteroides.Otu0863 0.000e+00
SB22 patient Bacteroides.Otu0863 7.678e-04
SB23 patient Bacteroides.Otu0863 1.493e-02
SB24 control Bacteroides.Otu0863 1.420e-02
SB25 control Bacteroides.Otu0863 7.992e-02
SB26 control Bacteroides.Otu0863 9.401e-03
SB28 patient Bacteroides.Otu0863 3.934e-04
SB29 patient Bacteroides.Otu0863 0.000e+00
SB3 control Bacteroides.Otu0863 1.658e-03
SB30 patient Bacteroides.Otu0863 2.907e-02
SB31 control Bacteroides.Otu0863 5.201e-03
SB32 control Bacteroides.Otu0863 1.084e-02
SB33 control Bacteroides.Otu0863 7.925e-03
SB34 patient Bacteroides.Otu0863 1.600e-01
SB35 patient Bacteroides.Otu0863 3.011e-02
SB36 patient Bacteroides.Otu0863 2.511e-02
SB38 patient Bacteroides.Otu0863 2.756e-02
SB39 patient Bacteroides.Otu0863 1.836e-02
SB4 patient Bacteroides.Otu0863 1.809e-03
SB40 control Bacteroides.Otu0863 8.925e-03
SB41 patient Bacteroides.Otu0863 1.372e-03
SB42 patient Bacteroides.Otu0863 2.575e-02
SB43 patient Bacteroides.Otu0863 3.300e-03
SB44 patient Bacteroides.Otu0863 4.201e-02
SB45 control Bacteroides.Otu0863 0.000e+00

(1.2.1.4.6.2.2.4.1.1.1) Widget 105. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type. Click to see HTML widget file in full window: ./1.2.1.4.6.2.2.4.1.1.1-323148cbf02Dynamic.Pivot.Table.html

(1.2.1.4.6.2.2.4.1.1.1) Widget 106. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type. Click to see HTML widget file in full window: ./1.2.1.4.6.2.2.4.1.1.1-32339f89503Dynamic.Pivot.Table.html

(1.2.1.4.6.2.2.4.1.1.1) Table 101. Summary table. Data grouped by Sample.type. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.2.4.1.1.1-3233fc83807.1.2.1.4.6.2.2.4.1.1.csv

feature Sample.type mean sd median incidence
Lachnospiraceae.Otu2512 control 8.089e-03 7.484e-03 6.105e-03 0.88889
Lachnospiraceae.Otu2512 patient 7.134e-04 1.544e-03 1.328e-04 0.60870
Lachnospiracea_incertae_sedis.Otu1990 control 3.538e-03 2.436e-03 3.744e-03 0.94444
Lachnospiracea_incertae_sedis.Otu1990 patient 6.134e-04 1.978e-03 0.000e+00 0.39130
Lachnospiracea_incertae_sedis.Otu0113 control 4.628e-03 4.744e-03 4.314e-03 0.94444
Lachnospiracea_incertae_sedis.Otu0113 patient 9.713e-04 1.389e-03 3.859e-04 0.65217
Ruminococcus.Otu1859 control 3.263e-02 5.916e-02 5.089e-03 0.72222
Ruminococcus.Otu1859 patient 1.516e-03 5.680e-03 0.000e+00 0.26087
Lachnospiraceae.Otu2612 control 2.487e-03 2.522e-03 1.867e-03 0.83333
Lachnospiraceae.Otu2612 patient 5.766e-04 1.551e-03 0.000e+00 0.39130
Bacteroides.Otu2481 control 1.520e-02 6.431e-02 0.000e+00 0.27778
Bacteroides.Otu2481 patient 0.000e+00 0.000e+00 0.000e+00 0.00000
Bacteroides.Otu2375 control 1.343e-03 1.992e-03 8.292e-04 0.72222
Bacteroides.Otu2375 patient 3.049e-03 2.975e-03 2.303e-03 0.82609
Bacteroides.Otu0006 control 5.089e-03 6.353e-03 3.693e-03 0.83333
Bacteroides.Otu0006 patient 1.051e-02 9.565e-03 7.294e-03 0.82609
Bacteroides.Otu0001 control 5.002e-02 4.713e-02 4.124e-02 0.88889
Bacteroides.Otu0001 patient 1.168e-01 1.255e-01 9.063e-02 0.82609
Lachnospiraceae.Otu0578 control 2.743e-03 4.771e-03 8.513e-04 0.61111
Lachnospiraceae.Otu0578 patient 5.018e-04 1.614e-03 0.000e+00 0.30435
Clostridium_IV.Otu1864 control 5.366e-03 9.037e-03 5.352e-04 0.61111
Clostridium_IV.Otu1864 patient 1.203e-03 4.015e-03 0.000e+00 0.26087
Gemmiger.Otu0907 control 5.594e-03 5.095e-03 4.928e-03 0.83333
Gemmiger.Otu0907 patient 1.639e-03 2.581e-03 3.015e-04 0.56522
Lachnospiracea_incertae_sedis.Otu2746 control 3.061e-03 3.531e-03 1.719e-03 0.94444
Lachnospiracea_incertae_sedis.Otu2746 patient 5.556e-04 1.653e-03 0.000e+00 0.39130
Bifidobacterium.Otu1244 control 1.033e-02 4.238e-02 0.000e+00 0.44444
Bifidobacterium.Otu1244 patient 3.762e-04 1.735e-03 0.000e+00 0.08696
Lachnospiracea_incertae_sedis.Otu2549 control 3.346e-03 7.104e-03 1.820e-03 0.88889
Lachnospiracea_incertae_sedis.Otu2549 patient 5.937e-04 1.443e-03 0.000e+00 0.43478
Ruminococcus.Otu0422 control 7.200e-03 2.098e-02 0.000e+00 0.27778
Ruminococcus.Otu0422 patient 0.000e+00 0.000e+00 0.000e+00 0.00000
Blautia.Otu2475 control 1.882e-02 4.365e-02 7.955e-03 1.00000
Blautia.Otu2475 patient 6.579e-03 9.572e-03 2.046e-03 0.91304
Prevotella.Otu1987 control 5.778e-02 1.088e-01 0.000e+00 0.33333
Prevotella.Otu1987 patient 3.124e-02 9.994e-02 0.000e+00 0.26087
Blautia.Otu0591 control 2.090e-03 2.399e-03 1.421e-03 0.94444
Blautia.Otu0591 patient 1.149e-03 1.961e-03 5.491e-04 0.69565
Lachnospiraceae.Otu0220 control 6.197e-03 9.495e-03 4.598e-03 0.94444
Lachnospiraceae.Otu0220 patient 2.338e-03 4.937e-03 3.035e-04 0.60870
Prevotella.Otu1994 control 2.646e-02 6.088e-02 0.000e+00 0.22222
Prevotella.Otu1994 patient 3.362e-03 1.356e-02 0.000e+00 0.08696
Lachnospiraceae.Otu0875 control 1.801e-03 1.316e-03 1.645e-03 1.00000
Lachnospiraceae.Otu0875 patient 1.684e-03 3.408e-03 2.019e-04 0.60870
Bacteroides.Otu2460 control 7.456e-04 1.284e-03 2.760e-04 0.61111
Bacteroides.Otu2460 patient 2.787e-03 4.168e-03 6.726e-04 0.69565
Prevotella.Otu2702 control 2.482e-03 1.049e-02 0.000e+00 0.11111
Prevotella.Otu2702 patient 2.532e-05 1.214e-04 0.000e+00 0.04348
Bacteroides.Otu2416 control 6.226e-04 9.021e-04 3.109e-04 0.61111
Bacteroides.Otu2416 patient 2.589e-03 5.389e-03 1.009e-03 0.69565
Bacteroides.Otu2654 control 5.326e-03 8.407e-03 6.968e-04 0.77778
Bacteroides.Otu2654 patient 4.783e-02 9.677e-02 1.076e-02 0.78261
Bacteroides.Otu0863 control 1.046e-02 1.864e-02 6.083e-03 0.77778
Bacteroides.Otu0863 patient 3.229e-02 5.790e-02 1.493e-02 0.86957
Alistipes.Otu2508 control 2.027e-02 3.055e-02 7.646e-03 0.66667
Alistipes.Otu2508 patient 1.774e-02 4.589e-02 5.195e-04 0.52174
Lachnospiraceae.Otu2222 control 6.180e-03 9.342e-03 2.669e-03 0.88889
Lachnospiraceae.Otu2222 patient 1.298e-03 2.368e-03 0.000e+00 0.43478
Bacteroides.Otu2765 control 4.757e-03 7.410e-03 1.284e-03 0.72222
Bacteroides.Otu2765 patient 1.268e-02 1.724e-02 5.045e-03 0.91304
Erysipelotrichaceae_incertae_sedis.Otu0818 control 6.510e-04 1.330e-03 7.077e-05 0.50000
Erysipelotrichaceae_incertae_sedis.Otu0818 patient 1.994e-02 8.001e-02 9.525e-04 0.69565
Parabacteroides.Otu1378 control 1.584e-03 3.171e-03 3.250e-04 0.77778
Parabacteroides.Otu1378 patient 4.950e-03 8.585e-03 1.089e-04 0.52174
Bacteroides.Otu2104 control 2.444e-03 3.805e-03 6.177e-04 0.66667
Bacteroides.Otu2104 patient 6.132e-03 8.432e-03 2.170e-03 0.82609
Bacteroides.Otu2437 control 1.099e-02 2.383e-02 9.540e-04 0.66667
Bacteroides.Otu2437 patient 3.057e-03 6.170e-03 0.000e+00 0.47826
Dorea.Otu1142 control 6.256e-03 6.597e-03 3.989e-03 0.94444
Dorea.Otu1142 patient 3.746e-03 7.510e-03 7.597e-04 0.69565
Phascolarctobacterium.Otu1814 control 4.088e-03 9.770e-03 0.000e+00 0.22222
Phascolarctobacterium.Otu1814 patient 1.932e-03 4.753e-03 0.000e+00 0.39130
Clostridiales.Otu1597 control 5.664e-03 1.415e-02 0.000e+00 0.38889
Clostridiales.Otu1597 patient 2.330e-03 1.001e-02 0.000e+00 0.17391
Ruminococcaceae.Otu1504 control 6.865e-03 1.999e-02 0.000e+00 0.22222
Ruminococcaceae.Otu1504 patient 1.619e-03 7.748e-03 0.000e+00 0.08696
Lachnospiraceae.Otu0272 control 3.524e-03 6.857e-03 6.105e-04 0.83333
Lachnospiraceae.Otu0272 patient 5.243e-04 1.754e-03 0.000e+00 0.43478
Bacteroides.Otu1565 control 6.383e-03 2.442e-02 3.663e-05 0.50000
Bacteroides.Otu1565 patient 1.118e-03 3.293e-03 0.000e+00 0.34783
Klebsiella.Otu1452 control 5.117e-03 2.150e-02 0.000e+00 0.16667
Klebsiella.Otu1452 patient 3.720e-04 1.428e-03 0.000e+00 0.21739
Ruminococcus.Otu1429 control 2.571e-03 3.675e-03 1.021e-03 0.72222
Ruminococcus.Otu1429 patient 9.005e-04 2.007e-03 0.000e+00 0.30435
Bacteroides.Otu1726 control 1.187e-02 5.019e-02 0.000e+00 0.16667
Bacteroides.Otu1726 patient 0.000e+00 0.000e+00 0.000e+00 0.00000
Clostridium_XI.Otu2681 control 1.108e-03 1.390e-03 3.722e-04 0.72222
Clostridium_XI.Otu2681 patient 5.255e-03 2.114e-02 0.000e+00 0.43478
Prevotella.Otu2327 control 2.067e-03 5.152e-03 0.000e+00 0.22222
Prevotella.Otu2327 patient 8.837e-04 3.581e-03 0.000e+00 0.26087
Lachnospiracea_incertae_sedis.Otu1152 control 4.558e-03 7.373e-03 1.869e-03 0.88889
Lachnospiracea_incertae_sedis.Otu1152 patient 1.411e-03 3.185e-03 0.000e+00 0.47826
Bacteroides.Otu2120 control 1.664e-03 2.682e-03 8.408e-04 0.83333
Bacteroides.Otu2120 patient 2.811e-03 3.991e-03 9.707e-04 0.65217
Oscillibacter.Otu0154 control 1.744e-03 2.055e-03 6.181e-04 0.77778
Oscillibacter.Otu0154 patient 1.926e-03 3.131e-03 5.047e-04 0.73913
Bacteroides.Otu2431 control 1.680e-02 2.110e-02 6.948e-03 0.77778
Bacteroides.Otu2431 patient 1.553e-02 2.341e-02 7.537e-03 0.82609
Bacteroides.Otu1201 control 4.442e-03 7.397e-03 2.154e-03 0.72222
Bacteroides.Otu1201 patient 1.796e-02 4.252e-02 4.950e-03 0.82609
Lachnospiraceae.Otu0790 control 1.920e-03 3.294e-03 7.615e-04 0.88889
Lachnospiraceae.Otu0790 patient 2.508e-03 3.446e-03 1.029e-03 0.69565
Prevotella.Otu0773 control 3.349e-03 9.602e-03 0.000e+00 0.27778
Prevotella.Otu0773 patient 1.025e-03 3.635e-03 0.000e+00 0.17391
Bacteroides.Otu2343 control 7.165e-04 1.612e-03 0.000e+00 0.44444
Bacteroides.Otu2343 patient 7.836e-03 2.709e-02 4.426e-05 0.52174
Alistipes.Otu1466 control 1.627e-02 4.028e-02 2.699e-04 0.50000
Alistipes.Otu1466 patient 1.086e-02 1.787e-02 2.576e-03 0.52174
Escherichia_Shigella.Otu2393 control 9.903e-03 3.953e-02 3.853e-04 0.61111
Escherichia_Shigella.Otu2393 patient 1.408e-02 4.403e-02 0.000e+00 0.39130
Enterococcus.Otu1019 control 3.328e-03 1.308e-02 0.000e+00 0.22222
Enterococcus.Otu1019 patient 3.367e-03 1.493e-02 0.000e+00 0.26087
Prevotella.Otu1563 control 3.396e-03 6.604e-03 0.000e+00 0.27778
Prevotella.Otu1563 patient 1.473e-03 3.956e-03 0.000e+00 0.21739
Prevotella.Otu2220 control 2.483e-04 6.093e-04 0.000e+00 0.22222
Prevotella.Otu2220 patient 1.738e-03 7.275e-03 0.000e+00 0.13043
Blautia.Otu2495 control 4.311e-03 7.419e-03 2.099e-03 0.88889
Blautia.Otu2495 patient 9.913e-04 1.475e-03 3.035e-04 0.65217
Sutterella.Otu0171 control 7.049e-03 2.434e-02 0.000e+00 0.27778
Sutterella.Otu0171 patient 2.772e-03 7.848e-03 0.000e+00 0.30435
Roseburia.Otu2084 control 2.090e-03 1.507e-03 1.702e-03 0.94444
Roseburia.Otu2084 patient 1.507e-03 1.917e-03 8.237e-04 0.69565
Bacteroides.Otu2065 control 7.217e-03 1.371e-02 0.000e+00 0.33333
Bacteroides.Otu2065 patient 2.112e-02 8.207e-02 0.000e+00 0.21739
Bacteroides.Otu0480 control 9.209e-03 2.546e-02 0.000e+00 0.33333
Bacteroides.Otu0480 patient 9.011e-03 3.377e-02 0.000e+00 0.21739
Faecalibacterium.Otu0751 control 6.820e-03 6.094e-03 4.375e-03 0.88889
Faecalibacterium.Otu0751 patient 5.336e-03 7.840e-03 3.377e-03 0.86957
Bacteroides.Otu1624 control 2.800e-03 7.494e-03 0.000e+00 0.38889
Bacteroides.Otu1624 patient 6.359e-03 2.512e-02 0.000e+00 0.34783
Lactobacillus.Otu0959 control 1.012e-02 4.271e-02 0.000e+00 0.11111
Lactobacillus.Otu0959 patient 4.939e-05 2.369e-04 0.000e+00 0.04348
Alistipes.Otu0529 control 2.542e-03 4.959e-03 3.877e-04 0.55556
Alistipes.Otu0529 patient 1.489e-03 3.090e-03 0.000e+00 0.21739
Bacteroides.Otu0775 control 1.567e-03 2.387e-03 1.674e-04 0.55556
Bacteroides.Otu0775 patient 1.497e-03 2.487e-03 1.821e-04 0.60870
Prevotellaceae.Otu2503 control 2.130e-03 6.719e-03 0.000e+00 0.22222
Prevotellaceae.Otu2503 patient 9.557e-04 4.574e-03 0.000e+00 0.08696
Bacteroides.Otu0752 control 1.445e-03 1.774e-03 7.412e-04 0.77778
Bacteroides.Otu0752 patient 1.321e-03 1.796e-03 6.061e-04 0.69565
Ruminococcaceae.Otu2507 control 2.604e-03 7.475e-03 1.781e-04 0.66667
Ruminococcaceae.Otu2507 patient 3.425e-04 9.216e-04 0.000e+00 0.26087
Prevotella.Otu2602 control 8.172e-03 1.967e-02 0.000e+00 0.33333
Prevotella.Otu2602 patient 1.987e-03 4.695e-03 0.000e+00 0.21739
Bacteroides.Otu2216 control 1.199e-03 2.663e-03 0.000e+00 0.33333
Bacteroides.Otu2216 patient 4.819e-03 1.703e-02 0.000e+00 0.17391
Bacteroides.Otu1411 control 2.204e-03 5.126e-03 2.173e-04 0.66667
Bacteroides.Otu1411 patient 1.251e-03 3.727e-03 0.000e+00 0.47826
Bacteroides.Otu0848 control 1.089e-02 2.184e-02 1.310e-03 0.72222
Bacteroides.Otu0848 patient 2.252e-02 3.495e-02 6.558e-03 0.86957
Sutterella.Otu1997 control 2.687e-03 6.135e-03 1.343e-04 0.50000
Sutterella.Otu1997 patient 3.454e-03 1.218e-02 0.000e+00 0.21739
Ruminococcaceae.Otu0064 control 3.833e-03 9.592e-03 0.000e+00 0.27778
Ruminococcaceae.Otu0064 patient 2.216e-05 8.372e-05 0.000e+00 0.08696
Prevotella.Otu2666 control 5.942e-04 2.426e-03 0.000e+00 0.16667
Prevotella.Otu2666 patient 2.434e-03 1.166e-02 0.000e+00 0.08696
Parabacteroides.Otu1736 control 4.485e-03 4.986e-03 3.900e-03 0.83333
Parabacteroides.Otu1736 patient 2.509e-02 9.916e-02 1.328e-04 0.56522
Akkermansia.Otu1935 control 3.002e-03 6.251e-03 0.000e+00 0.38889
Akkermansia.Otu1935 patient 1.025e-02 3.615e-02 0.000e+00 0.34783
Prevotella.Otu1633 control 4.933e-03 1.103e-02 0.000e+00 0.38889
Prevotella.Otu1633 patient 4.798e-03 1.274e-02 0.000e+00 0.43478
Prevotella.Otu0634 control 4.195e-03 9.120e-03 6.534e-05 0.55556
Prevotella.Otu0634 patient 3.395e-03 8.853e-03 0.000e+00 0.21739
Lachnospiraceae.Otu0898 control 5.574e-03 2.115e-02 3.538e-05 0.50000
Lachnospiraceae.Otu0898 patient 1.387e-03 2.479e-03 4.038e-04 0.69565
Prevotella.Otu1319 control 5.167e-03 1.297e-02 0.000e+00 0.27778
Prevotella.Otu1319 patient 1.105e-03 3.174e-03 0.000e+00 0.21739
Lachnospiracea_incertae_sedis.Otu0778 control 2.174e-03 2.208e-03 1.642e-03 0.77778
Lachnospiracea_incertae_sedis.Otu0778 patient 1.813e-03 3.516e-03 3.708e-04 0.56522
Clostridium_XI.Otu1804 control 7.941e-03 8.436e-03 6.903e-03 0.94444
Clostridium_XI.Otu1804 patient 1.197e-02 2.513e-02 2.170e-03 0.82609
Prevotella.Otu0738 control 1.575e-04 3.486e-04 0.000e+00 0.22222
Prevotella.Otu0738 patient 4.889e-03 2.035e-02 0.000e+00 0.13043
Parabacteroides.Otu1107 control 9.455e-04 1.354e-03 3.872e-04 0.66667
Parabacteroides.Otu1107 patient 3.251e-03 7.330e-03 0.000e+00 0.34783
Bacteroides.Otu1854 control 1.570e-04 3.432e-04 0.000e+00 0.38889
Bacteroides.Otu1854 patient 1.771e-03 6.199e-03 0.000e+00 0.26087
Megamonas.Otu2657 control 9.015e-03 3.076e-02 0.000e+00 0.16667
Megamonas.Otu2657 patient 9.060e-04 4.321e-03 0.000e+00 0.08696
Lachnospiraceae.Otu2599 control 1.449e-03 1.517e-03 8.462e-04 0.94444
Lachnospiraceae.Otu2599 patient 2.570e-03 5.043e-03 6.030e-04 0.78261
Streptococcus.Otu0749 control 4.183e-03 1.775e-02 0.000e+00 0.05556
Streptococcus.Otu0749 patient 7.059e-05 3.156e-04 0.000e+00 0.08696
Catenibacterium.Otu2320 control 3.069e-03 1.197e-02 0.000e+00 0.11111
Catenibacterium.Otu2320 patient 2.785e-04 1.336e-03 0.000e+00 0.04348
Bacteroides.Otu2520 control 4.754e-02 7.015e-02 1.518e-02 0.77778
Bacteroides.Otu2520 patient 6.108e-02 1.054e-01 1.473e-02 0.86957
Bacteroides.Otu0069 control 6.033e-03 5.392e-03 4.877e-03 0.77778
Bacteroides.Otu0069 patient 1.411e-02 1.696e-02 1.076e-02 0.82609
Clostridium_XlVa.Otu0236 control 6.075e-03 1.055e-02 2.085e-03 0.94444
Clostridium_XlVa.Otu0236 patient 4.005e-03 5.116e-03 2.152e-03 0.95652
Roseburia.Otu1051 control 2.588e-03 3.673e-03 1.840e-03 0.94444
Roseburia.Otu1051 patient 2.491e-03 4.068e-03 8.581e-04 0.73913
Bacteroides.Otu1669 control 1.649e-03 2.148e-03 5.003e-04 0.72222
Bacteroides.Otu1669 patient 1.601e-03 2.547e-03 3.859e-04 0.65217
Bacteroides.Otu0877 control 2.323e-03 4.360e-03 1.019e-03 0.72222
Bacteroides.Otu0877 patient 4.673e-03 9.931e-03 1.180e-03 0.78261
Lachnospiracea_incertae_sedis.Otu0651 control 2.312e-03 5.381e-03 3.831e-04 0.77778
Lachnospiracea_incertae_sedis.Otu0651 patient 1.078e-03 2.475e-03 8.659e-05 0.52174

(1.2.1.4.6.2.2.4.1.1.1) Figure 374. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar_stacked plot. Image file: plots/323734d750f.svg.

(1.2.1.4.6.2.2.4.1.1.1) Figure 375. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/323655cb2d2.svg.

(1.2.1.4.6.2.2.4.1.1.1) Figure 376. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3233c440e66.svg.

(1.2.1.4.6.2.2.4.1.1.1) Figure 377. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323577cbcbb.svg.

(1.2.1.4.6.2.2.4.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.4.1.2.1) Figure 378. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/3235afc0b74.svg.

(1.2.1.4.6.2.2.4.1.2.1) Figure 379. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3236e0e20fa.svg.

(1.2.1.4.6.2.2.4.1.2.1) Figure 380. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323766b0752.svg.

(1.2.1.4.6.2.2.4.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.2.1.4.6.2.2.4.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.4.2.1.1) Figure 381. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/32371fd0ff3.svg.

(1.2.1.4.6.2.2.4.2.1.1) Figure 382. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3234384790a.svg.

(1.2.1.4.6.2.2.4.2.1.1) Figure 383. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/32358f9362d.svg.

(1.2.1.4.6.2.2.4.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.2.4.2.2.1) Figure 384. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/323289e560d.svg.

(1.2.1.4.6.2.2.4.2.2.1) Figure 385. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3232b36ca68.svg.

(1.2.1.4.6.2.2.4.2.2.1) Figure 386. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/3233cbb5c3b.svg.

(1.2.1.4.6.2.3) Grouping variables Sample.type,age.quant
(1.2.1.4.6.2.4) Iterating over Abundance. profile sorting order
(1.2.1.4.6.2.4.1) Abundance. profile sorting order: average abundance
(1.2.1.4.6.2.4.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.2.1.4.6.2.4.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.2.1.4.6.2.4.2.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.4.2.1.1.0) Table 102. Data table used for plots. Data grouped by Sample.type,age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.4.2.1.1.0-323645c2ad5.1.2.1.4.6.2.4.2.1.1.csv

.record.id Sample.type age.quant feature Abundance
SB1 control (8.71,15.3] Bacteroides.Otu0001 1.546e-02
SB10 control (15.3,26.4] Bacteroides.Otu0001 1.567e-02
SB11 patient (8.71,15.3] Bacteroides.Otu0001 2.143e-02
SB12 control [3.18,6.27] Bacteroides.Otu0001 0.000e+00
SB13 control (6.27,8.71] Bacteroides.Otu0001 4.313e-02
SB14 control (8.71,15.3] Bacteroides.Otu0001 2.798e-02
SB15 control (8.71,15.3] Bacteroides.Otu0001 5.819e-02
SB16 patient (15.3,26.4] Bacteroides.Otu0001 1.738e-01
SB17 patient (15.3,26.4] Bacteroides.Otu0001 6.084e-02
SB18 patient (15.3,26.4] Bacteroides.Otu0001 7.129e-03
SB19 control (15.3,26.4] Bacteroides.Otu0001 4.404e-03
SB21 control [3.18,6.27] Bacteroides.Otu0001 9.430e-02
SB22 patient (6.27,8.71] Bacteroides.Otu0001 1.800e-01
SB23 patient (15.3,26.4] Bacteroides.Otu0001 3.120e-01
SB24 control (8.71,15.3] Bacteroides.Otu0001 6.268e-02
SB25 control (8.71,15.3] Bacteroides.Otu0001 6.138e-02
SB26 control (6.27,8.71] Bacteroides.Otu0001 5.936e-02
SB28 patient (6.27,8.71] Bacteroides.Otu0001 0.000e+00
SB29 patient (6.27,8.71] Bacteroides.Otu0001 1.037e-01
SB3 control [3.18,6.27] Bacteroides.Otu0001 2.902e-03
SB30 patient (6.27,8.71] Bacteroides.Otu0001 1.891e-01
SB31 control (8.71,15.3] Bacteroides.Otu0001 1.585e-01
SB32 control (15.3,26.4] Bacteroides.Otu0001 8.035e-02
SB33 control (8.71,15.3] Bacteroides.Otu0001 2.751e-02
SB34 patient (15.3,26.4] Bacteroides.Otu0001 3.325e-02
SB35 patient (8.71,15.3] Bacteroides.Otu0001 5.347e-01
SB36 patient [3.18,6.27] Bacteroides.Otu0001 1.941e-01
SB38 patient (15.3,26.4] Bacteroides.Otu0001 1.512e-01
SB39 patient (8.71,15.3] Bacteroides.Otu0001 4.380e-02
SB4 patient [3.18,6.27] Bacteroides.Otu0001 1.179e-01
SB40 control [3.18,6.27] Bacteroides.Otu0001 1.492e-01
SB41 patient (6.27,8.71] Bacteroides.Otu0001 2.363e-01
SB42 patient [3.18,6.27] Bacteroides.Otu0001 0.000e+00
SB43 patient (15.3,26.4] Bacteroides.Otu0001 1.247e-01
SB44 patient [3.18,6.27] Bacteroides.Otu0001 0.000e+00
SB45 control (15.3,26.4] Bacteroides.Otu0001 0.000e+00
SB5 patient (15.3,26.4] Bacteroides.Otu0001 5.829e-02
SB6 patient (6.27,8.71] Bacteroides.Otu0001 5.265e-02
SB7 control (15.3,26.4] Bacteroides.Otu0001 3.935e-02
SB8 patient (15.3,26.4] Bacteroides.Otu0001 9.063e-02
SB9 patient (8.71,15.3] Bacteroides.Otu0001 0.000e+00
SB1 control (8.71,15.3] Bacteroides.Otu2520 1.330e-01
SB10 control (15.3,26.4] Bacteroides.Otu2520 5.961e-03
SB11 patient (8.71,15.3] Bacteroides.Otu2520 1.473e-02
SB12 control [3.18,6.27] Bacteroides.Otu2520 0.000e+00
SB13 control (6.27,8.71] Bacteroides.Otu2520 0.000e+00
SB14 control (8.71,15.3] Bacteroides.Otu2520 1.289e-03
SB15 control (8.71,15.3] Bacteroides.Otu2520 4.378e-02
SB16 patient (15.3,26.4] Bacteroides.Otu2520 1.862e-02
SB17 patient (15.3,26.4] Bacteroides.Otu2520 5.531e-03
SB18 patient (15.3,26.4] Bacteroides.Otu2520 1.638e-01
SB19 control (15.3,26.4] Bacteroides.Otu2520 1.233e-03
SB21 control [3.18,6.27] Bacteroides.Otu2520 0.000e+00
SB22 patient (6.27,8.71] Bacteroides.Otu2520 2.610e-02
SB23 patient (15.3,26.4] Bacteroides.Otu2520 4.034e-04
SB24 control (8.71,15.3] Bacteroides.Otu2520 1.951e-02
SB25 control (8.71,15.3] Bacteroides.Otu2520 2.664e-02
SB26 control (6.27,8.71] Bacteroides.Otu2520 2.417e-01
SB28 patient (6.27,8.71] Bacteroides.Otu2520 7.120e-02
SB29 patient (6.27,8.71] Bacteroides.Otu2520 0.000e+00
SB3 control [3.18,6.27] Bacteroides.Otu2520 4.145e-03
SB30 patient (6.27,8.71] Bacteroides.Otu2520 5.047e-04
SB31 control (8.71,15.3] Bacteroides.Otu2520 9.282e-02
SB32 control (15.3,26.4] Bacteroides.Otu2520 3.158e-02
SB33 control (8.71,15.3] Bacteroides.Otu2520 1.085e-02
SB34 patient (15.3,26.4] Bacteroides.Otu2520 1.003e-01
SB35 patient (8.71,15.3] Bacteroides.Otu2520 1.525e-02
SB36 patient [3.18,6.27] Bacteroides.Otu2520 4.566e-02
SB38 patient (15.3,26.4] Bacteroides.Otu2520 8.620e-03
SB39 patient (8.71,15.3] Bacteroides.Otu2520 1.440e-01
SB4 patient [3.18,6.27] Bacteroides.Otu2520 1.715e-01
SB40 control [3.18,6.27] Bacteroides.Otu2520 6.748e-02
SB41 patient (6.27,8.71] Bacteroides.Otu2520 1.504e-01
SB42 patient [3.18,6.27] Bacteroides.Otu2520 4.602e-01
SB43 patient (15.3,26.4] Bacteroides.Otu2520 2.912e-03
SB44 patient [3.18,6.27] Bacteroides.Otu2520 0.000e+00
SB45 control (15.3,26.4] Bacteroides.Otu2520 0.000e+00
SB5 patient (15.3,26.4] Bacteroides.Otu2520 2.179e-04
SB6 patient (6.27,8.71] Bacteroides.Otu2520 0.000e+00
SB7 control (15.3,26.4] Bacteroides.Otu2520 1.756e-01
SB8 patient (15.3,26.4] Bacteroides.Otu2520 4.540e-03
SB9 patient (8.71,15.3] Bacteroides.Otu2520 3.786e-04
SB1 control (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB10 control (15.3,26.4] Prevotella.Otu1987 2.009e-01
SB11 patient (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB12 control [3.18,6.27] Prevotella.Otu1987 0.000e+00
SB13 control (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB14 control (8.71,15.3] Prevotella.Otu1987 2.937e-01
SB15 control (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB16 patient (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB17 patient (15.3,26.4] Prevotella.Otu1987 4.680e-01
SB18 patient (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB19 control (15.3,26.4] Prevotella.Otu1987 1.362e-01
SB21 control [3.18,6.27] Prevotella.Otu1987 0.000e+00
SB22 patient (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB23 patient (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB24 control (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB25 control (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB26 control (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB28 patient (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB29 patient (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB3 control [3.18,6.27] Prevotella.Otu1987 7.731e-02
SB30 patient (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB31 control (8.71,15.3] Prevotella.Otu1987 7.326e-05
SB32 control (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB33 control (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB34 patient (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB35 patient (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB36 patient [3.18,6.27] Prevotella.Otu1987 4.186e-02
SB38 patient (15.3,26.4] Prevotella.Otu1987 1.068e-01
SB39 patient (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB4 patient [3.18,6.27] Prevotella.Otu1987 0.000e+00
SB40 control [3.18,6.27] Prevotella.Otu1987 0.000e+00
SB41 patient (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB42 patient [3.18,6.27] Prevotella.Otu1987 0.000e+00
SB43 patient (15.3,26.4] Prevotella.Otu1987 9.979e-02
SB44 patient [3.18,6.27] Prevotella.Otu1987 0.000e+00
SB45 control (15.3,26.4] Prevotella.Otu1987 3.318e-01
SB5 patient (15.3,26.4] Prevotella.Otu1987 6.537e-04
SB6 patient (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB7 control (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB8 patient (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB9 patient (8.71,15.3] Prevotella.Otu1987 1.515e-03
SB1 control (8.71,15.3] Bacteroides.Otu2654 5.001e-03
SB10 control (15.3,26.4] Bacteroides.Otu2654 8.516e-05
SB11 patient (8.71,15.3] Bacteroides.Otu2654 0.000e+00
SB12 control [3.18,6.27] Bacteroides.Otu2654 0.000e+00
SB13 control (6.27,8.71] Bacteroides.Otu2654 0.000e+00
SB14 control (8.71,15.3] Bacteroides.Otu2654 1.289e-04
SB15 control (8.71,15.3] Bacteroides.Otu2654 2.261e-02
SB16 patient (15.3,26.4] Bacteroides.Otu2654 1.076e-02
SB17 patient (15.3,26.4] Bacteroides.Otu2654 2.277e-02
SB18 patient (15.3,26.4] Bacteroides.Otu2654 4.125e-01
SB19 control (15.3,26.4] Bacteroides.Otu2654 7.046e-04
SB21 control [3.18,6.27] Bacteroides.Otu2654 0.000e+00
SB22 patient (6.27,8.71] Bacteroides.Otu2654 8.868e-02
SB23 patient (15.3,26.4] Bacteroides.Otu2654 6.280e-02
SB24 control (8.71,15.3] Bacteroides.Otu2654 2.467e-02
SB25 control (8.71,15.3] Bacteroides.Otu2654 2.131e-04
SB26 control (6.27,8.71] Bacteroides.Otu2654 1.612e-03
SB28 patient (6.27,8.71] Bacteroides.Otu2654 0.000e+00
SB29 patient (6.27,8.71] Bacteroides.Otu2654 0.000e+00
SB3 control [3.18,6.27] Bacteroides.Otu2654 8.290e-04
SB30 patient (6.27,8.71] Bacteroides.Otu2654 2.510e-01
SB31 control (8.71,15.3] Bacteroides.Otu2654 1.201e-02
SB32 control (15.3,26.4] Bacteroides.Otu2654 7.741e-03
SB33 control (8.71,15.3] Bacteroides.Otu2654 6.891e-04
SB34 patient (15.3,26.4] Bacteroides.Otu2654 2.251e-03
SB35 patient (8.71,15.3] Bacteroides.Otu2654 8.069e-02
SB36 patient [3.18,6.27] Bacteroides.Otu2654 4.947e-03
SB38 patient (15.3,26.4] Bacteroides.Otu2654 3.430e-02
SB39 patient (8.71,15.3] Bacteroides.Otu2654 1.159e-02
SB4 patient [3.18,6.27] Bacteroides.Otu2654 6.090e-02
SB40 control [3.18,6.27] Bacteroides.Otu2654 1.892e-02
SB41 patient (6.27,8.71] Bacteroides.Otu2654 3.439e-02
SB42 patient [3.18,6.27] Bacteroides.Otu2654 1.443e-03
SB43 patient (15.3,26.4] Bacteroides.Otu2654 1.718e-02
SB44 patient [3.18,6.27] Bacteroides.Otu2654 2.746e-04
SB45 control (15.3,26.4] Bacteroides.Otu2654 0.000e+00
SB5 patient (15.3,26.4] Bacteroides.Otu2654 0.000e+00
SB6 patient (6.27,8.71] Bacteroides.Otu2654 7.416e-04
SB7 control (15.3,26.4] Bacteroides.Otu2654 6.369e-04
SB8 patient (15.3,26.4] Bacteroides.Otu2654 3.027e-03
SB9 patient (8.71,15.3] Bacteroides.Otu2654 0.000e+00
SB1 control (8.71,15.3] Bacteroides.Otu0863 4.092e-03
SB10 control (15.3,26.4] Bacteroides.Otu0863 8.260e-03
SB11 patient (8.71,15.3] Bacteroides.Otu0863 2.397e-01
SB12 control [3.18,6.27] Bacteroides.Otu0863 0.000e+00
SB13 control (6.27,8.71] Bacteroides.Otu0863 0.000e+00
SB14 control (8.71,15.3] Bacteroides.Otu0863 2.708e-03
SB15 control (8.71,15.3] Bacteroides.Otu0863 6.964e-03
SB16 patient (15.3,26.4] Bacteroides.Otu0863 0.000e+00
SB17 patient (15.3,26.4] Bacteroides.Otu0863 1.672e-03
SB18 patient (15.3,26.4] Bacteroides.Otu0863 2.976e-03
SB19 control (15.3,26.4] Bacteroides.Otu0863 5.284e-04
SB21 control [3.18,6.27] Bacteroides.Otu0863 0.000e+00
SB22 patient (6.27,8.71] Bacteroides.Otu0863 7.678e-04
SB23 patient (15.3,26.4] Bacteroides.Otu0863 1.493e-02
SB24 control (8.71,15.3] Bacteroides.Otu0863 1.420e-02
SB25 control (8.71,15.3] Bacteroides.Otu0863 7.992e-02
SB26 control (6.27,8.71] Bacteroides.Otu0863 9.401e-03
SB28 patient (6.27,8.71] Bacteroides.Otu0863 3.934e-04
SB29 patient (6.27,8.71] Bacteroides.Otu0863 0.000e+00
SB3 control [3.18,6.27] Bacteroides.Otu0863 1.658e-03
SB30 patient (6.27,8.71] Bacteroides.Otu0863 2.907e-02
SB31 control (8.71,15.3] Bacteroides.Otu0863 5.201e-03
SB32 control (15.3,26.4] Bacteroides.Otu0863 1.084e-02
SB33 control (8.71,15.3] Bacteroides.Otu0863 7.925e-03
SB34 patient (15.3,26.4] Bacteroides.Otu0863 1.600e-01
SB35 patient (8.71,15.3] Bacteroides.Otu0863 3.011e-02
SB36 patient [3.18,6.27] Bacteroides.Otu0863 2.511e-02
SB38 patient (15.3,26.4] Bacteroides.Otu0863 2.756e-02
SB39 patient (8.71,15.3] Bacteroides.Otu0863 1.836e-02
SB4 patient [3.18,6.27] Bacteroides.Otu0863 1.809e-03
SB40 control [3.18,6.27] Bacteroides.Otu0863 8.925e-03
SB41 patient (6.27,8.71] Bacteroides.Otu0863 1.372e-03
SB42 patient [3.18,6.27] Bacteroides.Otu0863 2.575e-02
SB43 patient (15.3,26.4] Bacteroides.Otu0863 3.300e-03
SB44 patient [3.18,6.27] Bacteroides.Otu0863 4.201e-02
SB45 control (15.3,26.4] Bacteroides.Otu0863 0.000e+00

(1.2.1.4.6.2.4.2.1.1.1) Widget 107. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type,age.quant. Click to see HTML widget file in full window: ./1.2.1.4.6.2.4.2.1.1.1-3235491427eDynamic.Pivot.Table.html

(1.2.1.4.6.2.4.2.1.1.1) Widget 108. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type,age.quant. Click to see HTML widget file in full window: ./1.2.1.4.6.2.4.2.1.1.1-32377598235Dynamic.Pivot.Table.html

(1.2.1.4.6.2.4.2.1.1.1) Table 103. Summary table. Data grouped by Sample.type,age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.4.2.1.1.1-323615d6a5c.1.2.1.4.6.2.4.2.1.1.csv

feature Sample.type age.quant mean sd median incidence
Bacteroides.Otu0001 control [3.18,6.27] 6.161e-02 0.0730034 4.860e-02 0.7500
Bacteroides.Otu0001 control (6.27,8.71] 5.125e-02 0.0114742 5.125e-02 1.0000
Bacteroides.Otu0001 control (8.71,15.3] 5.881e-02 0.0478927 5.819e-02 1.0000
Bacteroides.Otu0001 control (15.3,26.4] 2.795e-02 0.0330242 1.567e-02 0.8000
Bacteroides.Otu0001 patient [3.18,6.27] 7.799e-02 0.0952699 5.894e-02 0.5000
Bacteroides.Otu0001 patient (6.27,8.71] 1.270e-01 0.0903431 1.419e-01 0.8333
Bacteroides.Otu0001 patient (8.71,15.3] 1.500e-01 0.2571137 3.261e-02 0.7500
Bacteroides.Otu0001 patient (15.3,26.4] 1.124e-01 0.0926494 9.063e-02 1.0000
Bacteroides.Otu2520 control [3.18,6.27] 1.791e-02 0.0331048 2.073e-03 0.5000
Bacteroides.Otu2520 control (6.27,8.71] 1.209e-01 0.1709364 1.209e-01 0.5000
Bacteroides.Otu2520 control (8.71,15.3] 4.684e-02 0.0484243 2.664e-02 1.0000
Bacteroides.Otu2520 control (15.3,26.4] 4.288e-02 0.0753153 5.961e-03 0.8000
Bacteroides.Otu2520 patient [3.18,6.27] 1.693e-01 0.2070021 1.086e-01 0.7500
Bacteroides.Otu2520 patient (6.27,8.71] 4.136e-02 0.0601590 1.330e-02 0.6667
Bacteroides.Otu2520 patient (8.71,15.3] 4.358e-02 0.0672738 1.499e-02 1.0000
Bacteroides.Otu2520 patient (15.3,26.4] 3.388e-02 0.0581279 5.531e-03 1.0000
Prevotella.Otu1987 control [3.18,6.27] 1.933e-02 0.0386528 0.000e+00 0.2500
Prevotella.Otu1987 control (6.27,8.71] 0.000e+00 0.0000000 0.000e+00 0.0000
Prevotella.Otu1987 control (8.71,15.3] 4.197e-02 0.1110066 0.000e+00 0.2857
Prevotella.Otu1987 control (15.3,26.4] 1.338e-01 0.1410043 1.362e-01 0.6000
Prevotella.Otu1987 patient [3.18,6.27] 1.046e-02 0.0209285 0.000e+00 0.2500
Prevotella.Otu1987 patient (6.27,8.71] 0.000e+00 0.0000000 0.000e+00 0.0000
Prevotella.Otu1987 patient (8.71,15.3] 3.786e-04 0.0007573 0.000e+00 0.2500
Prevotella.Otu1987 patient (15.3,26.4] 7.503e-02 0.1540114 0.000e+00 0.4444
Bacteroides.Otu2654 control [3.18,6.27] 4.938e-03 0.0093309 4.145e-04 0.5000
Bacteroides.Otu2654 control (6.27,8.71] 8.058e-04 0.0011396 8.058e-04 0.5000
Bacteroides.Otu2654 control (8.71,15.3] 9.333e-03 0.0106473 5.001e-03 1.0000
Bacteroides.Otu2654 control (15.3,26.4] 1.834e-03 0.0033176 6.369e-04 0.8000
Bacteroides.Otu2654 patient [3.18,6.27] 1.689e-02 0.0294055 3.195e-03 1.0000
Bacteroides.Otu2654 patient (6.27,8.71] 6.246e-02 0.0986089 1.757e-02 0.6667
Bacteroides.Otu2654 patient (8.71,15.3] 2.307e-02 0.0387998 5.797e-03 0.5000
Bacteroides.Otu2654 patient (15.3,26.4] 6.284e-02 0.1326065 1.718e-02 0.8889
Bacteroides.Otu0863 control [3.18,6.27] 2.646e-03 0.0042587 8.290e-04 0.5000
Bacteroides.Otu0863 control (6.27,8.71] 4.701e-03 0.0066475 4.701e-03 0.5000
Bacteroides.Otu0863 control (8.71,15.3] 1.729e-02 0.0278681 6.964e-03 1.0000
Bacteroides.Otu0863 control (15.3,26.4] 9.473e-03 0.0112558 8.260e-03 0.8000
Bacteroides.Otu0863 patient [3.18,6.27] 2.367e-02 0.0165397 2.543e-02 1.0000
Bacteroides.Otu0863 patient (6.27,8.71] 7.925e-03 0.0120436 1.070e-03 0.8333
Bacteroides.Otu0863 patient (8.71,15.3] 7.498e-02 0.1100945 2.423e-02 1.0000
Bacteroides.Otu0863 patient (15.3,26.4] 3.338e-02 0.0555372 3.300e-03 0.7778
Faecalibacterium.Otu0067 control [3.18,6.27] 4.305e-02 0.0390801 4.562e-02 0.7500
Faecalibacterium.Otu0067 control (6.27,8.71] 1.031e-02 0.0134354 1.031e-02 1.0000
Faecalibacterium.Otu0067 control (8.71,15.3] 1.598e-02 0.0075075 1.556e-02 1.0000
Faecalibacterium.Otu0067 control (15.3,26.4] 3.142e-02 0.0228914 3.112e-02 1.0000
Faecalibacterium.Otu0067 patient [3.18,6.27] 2.246e-02 0.0134666 2.452e-02 1.0000
Faecalibacterium.Otu0067 patient (6.27,8.71] 1.152e-02 0.0153524 5.543e-03 0.8333
Faecalibacterium.Otu0067 patient (8.71,15.3] 1.856e-02 0.0162237 1.660e-02 1.0000
Faecalibacterium.Otu0067 patient (15.3,26.4] 1.927e-02 0.0258803 1.093e-02 1.0000
Bacteroides.Otu2038 control [3.18,6.27] 3.627e-03 0.0042608 3.149e-03 0.5000
Bacteroides.Otu2038 control (6.27,8.71] 6.793e-02 0.0937845 6.793e-02 1.0000
Bacteroides.Otu2038 control (8.71,15.3] 6.445e-03 0.0115359 2.708e-03 0.8571
Bacteroides.Otu2038 control (15.3,26.4] 6.999e-03 0.0138969 1.761e-04 1.0000
Bacteroides.Otu2038 patient [3.18,6.27] 7.359e-03 0.0094516 4.824e-03 0.5000
Bacteroides.Otu2038 patient (6.27,8.71] 5.827e-02 0.1105083 1.262e-02 0.8333
Bacteroides.Otu2038 patient (8.71,15.3] 7.687e-04 0.0005693 5.453e-04 1.0000
Bacteroides.Otu2038 patient (15.3,26.4] 2.457e-02 0.0505255 6.590e-03 1.0000
Alistipes.Otu2508 control [3.18,6.27] 1.032e-02 0.0121287 8.925e-03 0.5000
Alistipes.Otu2508 control (6.27,8.71] 1.343e-04 0.0001899 1.343e-04 0.5000
Alistipes.Otu2508 control (8.71,15.3] 3.559e-02 0.0440937 1.315e-02 0.5714
Alistipes.Otu2508 control (15.3,26.4] 1.484e-02 0.0137550 9.160e-03 1.0000
Alistipes.Otu2508 patient [3.18,6.27] 4.947e-03 0.0098935 0.000e+00 0.2500
Alistipes.Otu2508 patient (6.27,8.71] 5.715e-03 0.0123794 3.600e-04 0.5000
Alistipes.Otu2508 patient (8.71,15.3] 5.730e-02 0.1065987 6.119e-03 0.5000
Alistipes.Otu2508 patient (15.3,26.4] 1.386e-02 0.0202083 6.795e-04 0.6667
Bacteroides.Otu0848 control [3.18,6.27] 1.290e-02 0.0256707 1.036e-04 0.5000
Bacteroides.Otu0848 control (6.27,8.71] 6.715e-04 0.0009496 6.715e-04 0.5000
Bacteroides.Otu0848 control (8.71,15.3] 1.746e-02 0.0292176 4.689e-03 1.0000
Bacteroides.Otu0848 control (15.3,26.4] 4.181e-03 0.0079863 1.203e-03 0.6000
Bacteroides.Otu0848 patient [3.18,6.27] 3.314e-02 0.0505671 1.202e-02 1.0000
Bacteroides.Otu0848 patient (6.27,8.71] 2.474e-02 0.0514541 3.909e-03 0.6667
Bacteroides.Otu0848 patient (8.71,15.3] 2.882e-02 0.0281920 2.976e-02 1.0000
Bacteroides.Otu0848 patient (15.3,26.4] 1.352e-02 0.0166141 6.558e-03 0.8889
Bacteroides.Otu0929 control [3.18,6.27] 3.817e-03 0.0065148 8.507e-04 0.7500
Bacteroides.Otu0929 control (6.27,8.71] 1.343e-04 0.0001899 1.343e-04 0.5000
Bacteroides.Otu0929 control (8.71,15.3] 1.024e-02 0.0098325 4.619e-03 1.0000
Bacteroides.Otu0929 control (15.3,26.4] 1.027e-02 0.0123798 4.684e-03 0.8000
Bacteroides.Otu0929 patient [3.18,6.27] 6.090e-02 0.1067424 1.155e-02 0.7500
Bacteroides.Otu0929 patient (6.27,8.71] 2.362e-02 0.0273320 1.795e-02 0.8333
Bacteroides.Otu0929 patient (8.71,15.3] 2.280e-03 0.0030480 1.339e-03 0.5000
Bacteroides.Otu0929 patient (15.3,26.4] 1.487e-02 0.0281407 3.724e-03 0.7778
Bacteroides.Otu2431 control [3.18,6.27] 4.180e-03 0.0074556 6.844e-04 0.7500
Bacteroides.Otu2431 control (6.27,8.71] 1.343e-04 0.0001899 1.343e-04 0.5000
Bacteroides.Otu2431 control (8.71,15.3] 3.308e-02 0.0236139 3.431e-02 1.0000
Bacteroides.Otu2431 control (15.3,26.4] 1.078e-02 0.0143857 1.363e-03 0.6000
Bacteroides.Otu2431 patient [3.18,6.27] 3.155e-02 0.0535318 6.622e-03 1.0000
Bacteroides.Otu2431 patient (6.27,8.71] 1.908e-02 0.0095090 1.981e-02 1.0000
Bacteroides.Otu2431 patient (8.71,15.3] 9.586e-03 0.0111622 8.705e-03 0.5000
Bacteroides.Otu2431 patient (15.3,26.4] 8.685e-03 0.0110101 4.128e-03 0.7778
Parabacteroides.Otu1736 control [3.18,6.27] 4.143e-03 0.0053445 2.528e-03 0.7500
Parabacteroides.Otu1736 control (6.27,8.71] 2.421e-03 0.0034235 2.421e-03 0.5000
Parabacteroides.Otu1736 control (8.71,15.3] 6.134e-03 0.0061613 4.771e-03 1.0000
Parabacteroides.Otu1736 control (15.3,26.4] 3.276e-03 0.0039402 1.234e-03 0.8000
Parabacteroides.Otu1736 patient [3.18,6.27] 1.427e-03 0.0028539 0.000e+00 0.2500
Parabacteroides.Otu1736 patient (6.27,8.71] 8.228e-02 0.1939342 4.503e-04 0.6667
Parabacteroides.Otu1736 patient (8.71,15.3] 4.745e-03 0.0061430 2.794e-03 0.7500
Parabacteroides.Otu1736 patient (15.3,26.4] 6.521e-03 0.0137219 1.089e-04 0.5556
Ruminococcus.Otu1859 control [3.18,6.27] 4.104e-02 0.0484895 3.142e-02 0.7500
Ruminococcus.Otu1859 control (6.27,8.71] 1.053e-01 0.1489046 1.053e-01 0.5000
Ruminococcus.Otu1859 control (8.71,15.3] 7.589e-03 0.0073333 6.607e-03 0.7143
Ruminococcus.Otu1859 control (15.3,26.4] 3.190e-02 0.0606400 1.410e-03 0.8000
Ruminococcus.Otu1859 patient [3.18,6.27] 6.227e-04 0.0010078 1.903e-04 0.5000
Ruminococcus.Otu1859 patient (6.27,8.71] 4.560e-03 0.0111688 0.000e+00 0.1667
Ruminococcus.Otu1859 patient (8.71,15.3] 0.000e+00 0.0000000 0.000e+00 0.0000
Ruminococcus.Otu1859 patient (15.3,26.4] 5.567e-04 0.0009120 0.000e+00 0.3333
Bacteroides.Otu2065 control [3.18,6.27] 0.000e+00 0.0000000 0.000e+00 0.0000
Bacteroides.Otu2065 control (6.27,8.71] 0.000e+00 0.0000000 0.000e+00 0.0000
Bacteroides.Otu2065 control (8.71,15.3] 1.225e-02 0.0155340 5.743e-05 0.5714
Bacteroides.Otu2065 control (15.3,26.4] 8.826e-03 0.0176488 0.000e+00 0.4000
Bacteroides.Otu2065 patient [3.18,6.27] 2.442e-02 0.0488393 0.000e+00 0.2500
Bacteroides.Otu2065 patient (6.27,8.71] 6.432e-02 0.1575350 0.000e+00 0.3333
Bacteroides.Otu2065 patient (8.71,15.3] 0.000e+00 0.0000000 0.000e+00 0.0000
Bacteroides.Otu2065 patient (15.3,26.4] 2.374e-04 0.0005967 0.000e+00 0.2222
Bacteroides.Otu2625 control [3.18,6.27] 2.965e-04 0.0003929 1.785e-04 0.5000
Bacteroides.Otu2625 control (6.27,8.71] 2.686e-04 0.0003799 2.686e-04 0.5000
Bacteroides.Otu2625 control (8.71,15.3] 1.424e-02 0.0237618 4.176e-03 0.8571
Bacteroides.Otu2625 control (15.3,26.4] 1.103e-03 0.0015307 7.784e-04 0.6000
Bacteroides.Otu2625 patient [3.18,6.27] 5.305e-02 0.0885449 1.354e-02 0.7500
Bacteroides.Otu2625 patient (6.27,8.71] 2.027e-02 0.0317556 1.514e-04 0.5000
Bacteroides.Otu2625 patient (8.71,15.3] 4.831e-04 0.0009662 0.000e+00 0.2500
Bacteroides.Otu2625 patient (15.3,26.4] 1.256e-02 0.0347302 1.068e-03 0.8889
Prevotella.Otu1994 control [3.18,6.27] 5.466e-02 0.1093264 0.000e+00 0.2500
Prevotella.Otu1994 control (6.27,8.71] 0.000e+00 0.0000000 0.000e+00 0.0000
Prevotella.Otu1994 control (8.71,15.3] 1.240e-02 0.0327966 0.000e+00 0.1429
Prevotella.Otu1994 control (15.3,26.4] 3.417e-02 0.0600817 0.000e+00 0.4000
Prevotella.Otu1994 patient [3.18,6.27] 1.608e-02 0.0321537 0.000e+00 0.2500
Prevotella.Otu1994 patient (6.27,8.71] 0.000e+00 0.0000000 0.000e+00 0.0000
Prevotella.Otu1994 patient (8.71,15.3] 0.000e+00 0.0000000 0.000e+00 0.0000
Prevotella.Otu1994 patient (15.3,26.4] 1.445e-03 0.0043357 0.000e+00 0.1111
Alistipes.Otu1466 control [3.18,6.27] 4.027e-04 0.0005131 2.699e-04 0.5000
Alistipes.Otu1466 control (6.27,8.71] 5.265e-02 0.0744523 5.265e-02 0.5000
Alistipes.Otu1466 control (8.71,15.3] 2.267e-02 0.0536940 0.000e+00 0.4286
Alistipes.Otu1466 control (15.3,26.4] 5.456e-03 0.0073067 2.632e-03 0.6000
Alistipes.Otu1466 patient [3.18,6.27] 8.924e-04 0.0017847 0.000e+00 0.2500
Alistipes.Otu1466 patient (6.27,8.71] 1.593e-02 0.0165545 1.347e-02 0.6667
Alistipes.Otu1466 patient (8.71,15.3] 5.555e-03 0.0094702 1.288e-03 0.5000
Alistipes.Otu1466 patient (15.3,26.4] 1.426e-02 0.0239998 3.106e-03 0.5556
Escherichia_Shigella.Otu2393 control [3.18,6.27] 4.225e-02 0.0839926 3.858e-04 0.7500
Escherichia_Shigella.Otu2393 control (6.27,8.71] 2.201e-04 0.0003112 2.201e-04 0.5000
Escherichia_Shigella.Otu2393 control (8.71,15.3] 9.291e-04 0.0016752 4.137e-04 0.7143
Escherichia_Shigella.Otu2393 control (15.3,26.4] 4.581e-04 0.0007638 0.000e+00 0.4000
Escherichia_Shigella.Otu2393 patient [3.18,6.27] 2.059e-04 0.0004119 0.000e+00 0.2500
Escherichia_Shigella.Otu2393 patient (6.27,8.71] 2.917e-02 0.0712758 0.000e+00 0.3333
Escherichia_Shigella.Otu2393 patient (8.71,15.3] 7.742e-04 0.0012684 2.232e-04 0.5000
Escherichia_Shigella.Otu2393 patient (15.3,26.4] 1.609e-02 0.0423584 0.000e+00 0.4444
Bacteroides.Otu1201 control [3.18,6.27] 2.542e-03 0.0042956 6.218e-04 0.5000
Bacteroides.Otu1201 control (6.27,8.71] 4.029e-04 0.0005698 4.029e-04 0.5000
Bacteroides.Otu1201 control (8.71,15.3] 8.274e-03 0.0106075 3.865e-03 1.0000
Bacteroides.Otu1201 control (15.3,26.4] 2.212e-03 0.0024787 1.858e-03 0.6000
Bacteroides.Otu1201 patient [3.18,6.27] 6.581e-02 0.0946339 2.830e-02 1.0000
Bacteroides.Otu1201 patient (6.27,8.71] 6.088e-03 0.0081835 3.482e-03 0.8333
Bacteroides.Otu1201 patient (8.71,15.3] 1.095e-02 0.0160543 4.498e-03 0.7500
Bacteroides.Otu1201 patient (15.3,26.4] 7.731e-03 0.0090022 4.950e-03 0.7778
Blautia.Otu2475 control [3.18,6.27] 5.786e-02 0.0898829 1.797e-02 1.0000
Blautia.Otu2475 control (6.27,8.71] 5.427e-03 0.0053962 5.427e-03 1.0000
Blautia.Otu2475 control (8.71,15.3] 6.320e-03 0.0039017 5.673e-03 1.0000
Blautia.Otu2475 control (15.3,26.4] 1.045e-02 0.0059024 1.084e-02 1.0000
Blautia.Otu2475 patient [3.18,6.27] 4.305e-03 0.0050523 2.792e-03 1.0000
Blautia.Otu2475 patient (6.27,8.71] 3.372e-03 0.0042011 1.242e-03 0.8333
Blautia.Otu2475 patient (8.71,15.3] 7.157e-03 0.0126632 1.252e-03 0.7500
Blautia.Otu2475 patient (15.3,26.4] 9.471e-03 0.0123023 4.630e-03 1.0000
Erysipelotrichaceae_incertae_sedis.Otu0818 control [3.18,6.27] 6.489e-04 0.0005161 6.679e-04 0.7500
Erysipelotrichaceae_incertae_sedis.Otu0818 control (6.27,8.71] 1.283e-03 0.0006751 1.283e-03 1.0000
Erysipelotrichaceae_incertae_sedis.Otu0818 control (8.71,15.3] 9.163e-04 0.0020646 0.000e+00 0.4286
Erysipelotrichaceae_incertae_sedis.Otu0818 control (15.3,26.4] 2.831e-05 0.0000633 0.000e+00 0.2000
Erysipelotrichaceae_incertae_sedis.Otu0818 patient [3.18,6.27] 1.475e-03 0.0017236 9.903e-04 0.7500
Erysipelotrichaceae_incertae_sedis.Otu0818 patient (6.27,8.71] 2.824e-03 0.0038120 1.557e-03 0.8333
Erysipelotrichaceae_incertae_sedis.Otu0818 patient (8.71,15.3] 9.789e-02 0.1917319 3.060e-03 0.5000
Erysipelotrichaceae_incertae_sedis.Otu0818 patient (15.3,26.4] 4.902e-03 0.0112871 9.525e-04 0.6667
Bacteroides.Otu0661 control [3.18,6.27] 3.348e-03 0.0063414 2.699e-04 0.5000
Bacteroides.Otu0661 control (6.27,8.71] 0.000e+00 0.0000000 0.000e+00 0.0000
Bacteroides.Otu0661 control (8.71,15.3] 1.123e-02 0.0119423 6.311e-03 1.0000
Bacteroides.Otu0661 control (15.3,26.4] 7.660e-03 0.0095119 3.321e-03 0.8000
Bacteroides.Otu0661 patient [3.18,6.27] 1.895e-02 0.0315718 4.813e-03 0.7500
Bacteroides.Otu0661 patient (6.27,8.71] 2.273e-02 0.0305738 1.262e-02 0.8333
Bacteroides.Otu0661 patient (8.71,15.3] 2.026e-03 0.0032209 6.696e-04 0.5000
Bacteroides.Otu0661 patient (15.3,26.4] 1.096e-02 0.0191471 1.029e-03 0.7778
Bacteroides.Otu0069 control [3.18,6.27] 7.617e-03 0.0087958 7.558e-03 0.5000
Bacteroides.Otu0069 control (6.27,8.71] 5.372e-03 0.0075972 5.372e-03 0.5000
Bacteroides.Otu0069 control (8.71,15.3] 7.016e-03 0.0041391 7.458e-03 1.0000
Bacteroides.Otu0069 control (15.3,26.4] 3.654e-03 0.0037331 2.044e-03 0.8000
Bacteroides.Otu0069 patient [3.18,6.27] 8.446e-03 0.0097653 8.140e-03 0.5000
Bacteroides.Otu0069 patient (6.27,8.71] 1.777e-02 0.0204301 1.345e-02 0.8333
Bacteroides.Otu0069 patient (8.71,15.3] 1.783e-02 0.0295110 4.758e-03 0.7500
Bacteroides.Otu0069 patient (15.3,26.4] 1.253e-02 0.0114871 1.076e-02 1.0000
Clostridium_XI.Otu1804 control [3.18,6.27] 8.559e-03 0.0070245 8.728e-03 0.7500
Clostridium_XI.Otu1804 control (6.27,8.71] 7.039e-03 0.0031170 7.039e-03 1.0000
Clostridium_XI.Otu1804 control (8.71,15.3] 5.352e-03 0.0040980 5.737e-03 1.0000
Clostridium_XI.Otu1804 control (15.3,26.4] 1.143e-02 0.0144949 6.967e-03 1.0000
Clostridium_XI.Otu1804 patient [3.18,6.27] 2.322e-03 0.0021188 2.401e-03 1.0000
Clostridium_XI.Otu1804 patient (6.27,8.71] 8.092e-03 0.0153540 1.985e-03 0.8333
Clostridium_XI.Otu1804 patient (8.71,15.3] 1.820e-02 0.0172178 1.917e-02 0.7500
Clostridium_XI.Otu1804 patient (15.3,26.4] 1.608e-02 0.0371565 1.655e-03 0.7778
Bacteroides.Otu2765 control [3.18,6.27] 4.923e-03 0.0095723 2.073e-04 0.5000
Bacteroides.Otu2765 control (6.27,8.71] 0.000e+00 0.0000000 0.000e+00 0.0000
Bacteroides.Otu2765 control (8.71,15.3] 6.727e-03 0.0080086 4.092e-03 1.0000
Bacteroides.Otu2765 control (15.3,26.4] 3.771e-03 0.0070080 1.022e-03 0.8000
Bacteroides.Otu2765 patient [3.18,6.27] 9.749e-03 0.0083641 9.414e-03 0.7500
Bacteroides.Otu2765 patient (6.27,8.71] 1.381e-02 0.0205643 4.712e-03 0.8333
Bacteroides.Otu2765 patient (8.71,15.3] 2.322e-02 0.0231370 2.199e-02 1.0000
Bacteroides.Otu2765 patient (15.3,26.4] 8.543e-03 0.0156784 2.356e-03 1.0000

(1.2.1.4.6.2.4.2.1.1.1) Figure 387. Abundance. Data grouped by Sample.type,age.quant. bar_stacked plot. Image file: plots/3233e608fcc.svg.

(1.2.1.4.6.2.4.2.1.1.1) Figure 388. Abundance. Data grouped by Sample.type,age.quant. bar (sample mean) plot. Image file: plots/3232d28df9f.svg.

(1.2.1.4.6.2.4.2.1.1.1) Figure 389. Abundance. Data grouped by Sample.type,age.quant. violin plot. Image file: plots/323626e435b.svg.

(1.2.1.4.6.2.4.2.1.1.1) Figure 390. Abundance. Data grouped by Sample.type,age.quant. boxplot plot. Image file: plots/3237153910.svg.

(1.2.1.4.6.2.4.2.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.4.2.1.2.1) Figure 391. Abundance. Data grouped by Sample.type,age.quant. bar (sample mean) plot. Image file: plots/3237f983591.svg.

(1.2.1.4.6.2.4.2.1.2.1) Figure 392. Abundance. Data grouped by Sample.type,age.quant. violin plot. Image file: plots/3237010ae8f.svg.

(1.2.1.4.6.2.4.2.1.2.1) Figure 393. Abundance. Data grouped by Sample.type,age.quant. boxplot plot. Image file: plots/3237c68b12.svg.

(1.2.1.4.6.2.4.2.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.2.1.4.6.2.4.2.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.4.2.2.1.1) Figure 394. Abundance. Data grouped by Sample.type,age.quant. bar (sample mean) plot. Image file: plots/3235e401fd4.svg.

(1.2.1.4.6.2.4.2.2.1.1) Figure 395. Abundance. Data grouped by Sample.type,age.quant. violin plot. Image file: plots/323206a8b2f.svg.

(1.2.1.4.6.2.4.2.2.1.1) Figure 396. Abundance. Data grouped by Sample.type,age.quant. boxplot plot. Image file: plots/32352e4f9b6.svg.

(1.2.1.4.6.2.4.2.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.4.2.2.2.1) Figure 397. Abundance. Data grouped by Sample.type,age.quant. bar (sample mean) plot. Image file: plots/3233563303f.svg.

(1.2.1.4.6.2.4.2.2.2.1) Figure 398. Abundance. Data grouped by Sample.type,age.quant. violin plot. Image file: plots/3234ce63d61.svg.

(1.2.1.4.6.2.4.2.2.2.1) Figure 399. Abundance. Data grouped by Sample.type,age.quant. boxplot plot. Image file: plots/323fec7303.svg.

(1.2.1.4.6.2.4.3) Abundance. profile sorting order: Ranking by 'stabsel' method
(1.2.1.4.6.2.4.4) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.2.1.4.6.2.4.4.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.2.1.4.6.2.4.4.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.4.4.1.1.0) Table 104. Data table used for plots. Data grouped by Sample.type,age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.4.4.1.1.0-3233c2dd856.1.2.1.4.6.2.4.4.1.1.csv

.record.id Sample.type age.quant feature Abundance
SB1 control (8.71,15.3] Bacteroides.Otu0001 1.546e-02
SB10 control (15.3,26.4] Bacteroides.Otu0001 1.567e-02
SB11 patient (8.71,15.3] Bacteroides.Otu0001 2.143e-02
SB12 control [3.18,6.27] Bacteroides.Otu0001 0.000e+00
SB13 control (6.27,8.71] Bacteroides.Otu0001 4.313e-02
SB14 control (8.71,15.3] Bacteroides.Otu0001 2.798e-02
SB15 control (8.71,15.3] Bacteroides.Otu0001 5.819e-02
SB16 patient (15.3,26.4] Bacteroides.Otu0001 1.738e-01
SB17 patient (15.3,26.4] Bacteroides.Otu0001 6.084e-02
SB18 patient (15.3,26.4] Bacteroides.Otu0001 7.129e-03
SB19 control (15.3,26.4] Bacteroides.Otu0001 4.404e-03
SB21 control [3.18,6.27] Bacteroides.Otu0001 9.430e-02
SB22 patient (6.27,8.71] Bacteroides.Otu0001 1.800e-01
SB23 patient (15.3,26.4] Bacteroides.Otu0001 3.120e-01
SB24 control (8.71,15.3] Bacteroides.Otu0001 6.268e-02
SB25 control (8.71,15.3] Bacteroides.Otu0001 6.138e-02
SB26 control (6.27,8.71] Bacteroides.Otu0001 5.936e-02
SB28 patient (6.27,8.71] Bacteroides.Otu0001 0.000e+00
SB29 patient (6.27,8.71] Bacteroides.Otu0001 1.037e-01
SB3 control [3.18,6.27] Bacteroides.Otu0001 2.902e-03
SB30 patient (6.27,8.71] Bacteroides.Otu0001 1.891e-01
SB31 control (8.71,15.3] Bacteroides.Otu0001 1.585e-01
SB32 control (15.3,26.4] Bacteroides.Otu0001 8.035e-02
SB33 control (8.71,15.3] Bacteroides.Otu0001 2.751e-02
SB34 patient (15.3,26.4] Bacteroides.Otu0001 3.325e-02
SB35 patient (8.71,15.3] Bacteroides.Otu0001 5.347e-01
SB36 patient [3.18,6.27] Bacteroides.Otu0001 1.941e-01
SB38 patient (15.3,26.4] Bacteroides.Otu0001 1.512e-01
SB39 patient (8.71,15.3] Bacteroides.Otu0001 4.380e-02
SB4 patient [3.18,6.27] Bacteroides.Otu0001 1.179e-01
SB40 control [3.18,6.27] Bacteroides.Otu0001 1.492e-01
SB41 patient (6.27,8.71] Bacteroides.Otu0001 2.363e-01
SB42 patient [3.18,6.27] Bacteroides.Otu0001 0.000e+00
SB43 patient (15.3,26.4] Bacteroides.Otu0001 1.247e-01
SB44 patient [3.18,6.27] Bacteroides.Otu0001 0.000e+00
SB45 control (15.3,26.4] Bacteroides.Otu0001 0.000e+00
SB5 patient (15.3,26.4] Bacteroides.Otu0001 5.829e-02
SB6 patient (6.27,8.71] Bacteroides.Otu0001 5.265e-02
SB7 control (15.3,26.4] Bacteroides.Otu0001 3.935e-02
SB8 patient (15.3,26.4] Bacteroides.Otu0001 9.063e-02
SB9 patient (8.71,15.3] Bacteroides.Otu0001 0.000e+00
SB1 control (8.71,15.3] Bacteroides.Otu2520 1.330e-01
SB10 control (15.3,26.4] Bacteroides.Otu2520 5.961e-03
SB11 patient (8.71,15.3] Bacteroides.Otu2520 1.473e-02
SB12 control [3.18,6.27] Bacteroides.Otu2520 0.000e+00
SB13 control (6.27,8.71] Bacteroides.Otu2520 0.000e+00
SB14 control (8.71,15.3] Bacteroides.Otu2520 1.289e-03
SB15 control (8.71,15.3] Bacteroides.Otu2520 4.378e-02
SB16 patient (15.3,26.4] Bacteroides.Otu2520 1.862e-02
SB17 patient (15.3,26.4] Bacteroides.Otu2520 5.531e-03
SB18 patient (15.3,26.4] Bacteroides.Otu2520 1.638e-01
SB19 control (15.3,26.4] Bacteroides.Otu2520 1.233e-03
SB21 control [3.18,6.27] Bacteroides.Otu2520 0.000e+00
SB22 patient (6.27,8.71] Bacteroides.Otu2520 2.610e-02
SB23 patient (15.3,26.4] Bacteroides.Otu2520 4.034e-04
SB24 control (8.71,15.3] Bacteroides.Otu2520 1.951e-02
SB25 control (8.71,15.3] Bacteroides.Otu2520 2.664e-02
SB26 control (6.27,8.71] Bacteroides.Otu2520 2.417e-01
SB28 patient (6.27,8.71] Bacteroides.Otu2520 7.120e-02
SB29 patient (6.27,8.71] Bacteroides.Otu2520 0.000e+00
SB3 control [3.18,6.27] Bacteroides.Otu2520 4.145e-03
SB30 patient (6.27,8.71] Bacteroides.Otu2520 5.047e-04
SB31 control (8.71,15.3] Bacteroides.Otu2520 9.282e-02
SB32 control (15.3,26.4] Bacteroides.Otu2520 3.158e-02
SB33 control (8.71,15.3] Bacteroides.Otu2520 1.085e-02
SB34 patient (15.3,26.4] Bacteroides.Otu2520 1.003e-01
SB35 patient (8.71,15.3] Bacteroides.Otu2520 1.525e-02
SB36 patient [3.18,6.27] Bacteroides.Otu2520 4.566e-02
SB38 patient (15.3,26.4] Bacteroides.Otu2520 8.620e-03
SB39 patient (8.71,15.3] Bacteroides.Otu2520 1.440e-01
SB4 patient [3.18,6.27] Bacteroides.Otu2520 1.715e-01
SB40 control [3.18,6.27] Bacteroides.Otu2520 6.748e-02
SB41 patient (6.27,8.71] Bacteroides.Otu2520 1.504e-01
SB42 patient [3.18,6.27] Bacteroides.Otu2520 4.602e-01
SB43 patient (15.3,26.4] Bacteroides.Otu2520 2.912e-03
SB44 patient [3.18,6.27] Bacteroides.Otu2520 0.000e+00
SB45 control (15.3,26.4] Bacteroides.Otu2520 0.000e+00
SB5 patient (15.3,26.4] Bacteroides.Otu2520 2.179e-04
SB6 patient (6.27,8.71] Bacteroides.Otu2520 0.000e+00
SB7 control (15.3,26.4] Bacteroides.Otu2520 1.756e-01
SB8 patient (15.3,26.4] Bacteroides.Otu2520 4.540e-03
SB9 patient (8.71,15.3] Bacteroides.Otu2520 3.786e-04
SB1 control (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB10 control (15.3,26.4] Prevotella.Otu1987 2.009e-01
SB11 patient (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB12 control [3.18,6.27] Prevotella.Otu1987 0.000e+00
SB13 control (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB14 control (8.71,15.3] Prevotella.Otu1987 2.937e-01
SB15 control (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB16 patient (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB17 patient (15.3,26.4] Prevotella.Otu1987 4.680e-01
SB18 patient (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB19 control (15.3,26.4] Prevotella.Otu1987 1.362e-01
SB21 control [3.18,6.27] Prevotella.Otu1987 0.000e+00
SB22 patient (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB23 patient (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB24 control (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB25 control (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB26 control (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB28 patient (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB29 patient (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB3 control [3.18,6.27] Prevotella.Otu1987 7.731e-02
SB30 patient (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB31 control (8.71,15.3] Prevotella.Otu1987 7.326e-05
SB32 control (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB33 control (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB34 patient (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB35 patient (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB36 patient [3.18,6.27] Prevotella.Otu1987 4.186e-02
SB38 patient (15.3,26.4] Prevotella.Otu1987 1.068e-01
SB39 patient (8.71,15.3] Prevotella.Otu1987 0.000e+00
SB4 patient [3.18,6.27] Prevotella.Otu1987 0.000e+00
SB40 control [3.18,6.27] Prevotella.Otu1987 0.000e+00
SB41 patient (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB42 patient [3.18,6.27] Prevotella.Otu1987 0.000e+00
SB43 patient (15.3,26.4] Prevotella.Otu1987 9.979e-02
SB44 patient [3.18,6.27] Prevotella.Otu1987 0.000e+00
SB45 control (15.3,26.4] Prevotella.Otu1987 3.318e-01
SB5 patient (15.3,26.4] Prevotella.Otu1987 6.537e-04
SB6 patient (6.27,8.71] Prevotella.Otu1987 0.000e+00
SB7 control (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB8 patient (15.3,26.4] Prevotella.Otu1987 0.000e+00
SB9 patient (8.71,15.3] Prevotella.Otu1987 1.515e-03
SB1 control (8.71,15.3] Bacteroides.Otu2654 5.001e-03
SB10 control (15.3,26.4] Bacteroides.Otu2654 8.516e-05
SB11 patient (8.71,15.3] Bacteroides.Otu2654 0.000e+00
SB12 control [3.18,6.27] Bacteroides.Otu2654 0.000e+00
SB13 control (6.27,8.71] Bacteroides.Otu2654 0.000e+00
SB14 control (8.71,15.3] Bacteroides.Otu2654 1.289e-04
SB15 control (8.71,15.3] Bacteroides.Otu2654 2.261e-02
SB16 patient (15.3,26.4] Bacteroides.Otu2654 1.076e-02
SB17 patient (15.3,26.4] Bacteroides.Otu2654 2.277e-02
SB18 patient (15.3,26.4] Bacteroides.Otu2654 4.125e-01
SB19 control (15.3,26.4] Bacteroides.Otu2654 7.046e-04
SB21 control [3.18,6.27] Bacteroides.Otu2654 0.000e+00
SB22 patient (6.27,8.71] Bacteroides.Otu2654 8.868e-02
SB23 patient (15.3,26.4] Bacteroides.Otu2654 6.280e-02
SB24 control (8.71,15.3] Bacteroides.Otu2654 2.467e-02
SB25 control (8.71,15.3] Bacteroides.Otu2654 2.131e-04
SB26 control (6.27,8.71] Bacteroides.Otu2654 1.612e-03
SB28 patient (6.27,8.71] Bacteroides.Otu2654 0.000e+00
SB29 patient (6.27,8.71] Bacteroides.Otu2654 0.000e+00
SB3 control [3.18,6.27] Bacteroides.Otu2654 8.290e-04
SB30 patient (6.27,8.71] Bacteroides.Otu2654 2.510e-01
SB31 control (8.71,15.3] Bacteroides.Otu2654 1.201e-02
SB32 control (15.3,26.4] Bacteroides.Otu2654 7.741e-03
SB33 control (8.71,15.3] Bacteroides.Otu2654 6.891e-04
SB34 patient (15.3,26.4] Bacteroides.Otu2654 2.251e-03
SB35 patient (8.71,15.3] Bacteroides.Otu2654 8.069e-02
SB36 patient [3.18,6.27] Bacteroides.Otu2654 4.947e-03
SB38 patient (15.3,26.4] Bacteroides.Otu2654 3.430e-02
SB39 patient (8.71,15.3] Bacteroides.Otu2654 1.159e-02
SB4 patient [3.18,6.27] Bacteroides.Otu2654 6.090e-02
SB40 control [3.18,6.27] Bacteroides.Otu2654 1.892e-02
SB41 patient (6.27,8.71] Bacteroides.Otu2654 3.439e-02
SB42 patient [3.18,6.27] Bacteroides.Otu2654 1.443e-03
SB43 patient (15.3,26.4] Bacteroides.Otu2654 1.718e-02
SB44 patient [3.18,6.27] Bacteroides.Otu2654 2.746e-04
SB45 control (15.3,26.4] Bacteroides.Otu2654 0.000e+00
SB5 patient (15.3,26.4] Bacteroides.Otu2654 0.000e+00
SB6 patient (6.27,8.71] Bacteroides.Otu2654 7.416e-04
SB7 control (15.3,26.4] Bacteroides.Otu2654 6.369e-04
SB8 patient (15.3,26.4] Bacteroides.Otu2654 3.027e-03
SB9 patient (8.71,15.3] Bacteroides.Otu2654 0.000e+00
SB1 control (8.71,15.3] Bacteroides.Otu0863 4.092e-03
SB10 control (15.3,26.4] Bacteroides.Otu0863 8.260e-03
SB11 patient (8.71,15.3] Bacteroides.Otu0863 2.397e-01
SB12 control [3.18,6.27] Bacteroides.Otu0863 0.000e+00
SB13 control (6.27,8.71] Bacteroides.Otu0863 0.000e+00
SB14 control (8.71,15.3] Bacteroides.Otu0863 2.708e-03
SB15 control (8.71,15.3] Bacteroides.Otu0863 6.964e-03
SB16 patient (15.3,26.4] Bacteroides.Otu0863 0.000e+00
SB17 patient (15.3,26.4] Bacteroides.Otu0863 1.672e-03
SB18 patient (15.3,26.4] Bacteroides.Otu0863 2.976e-03
SB19 control (15.3,26.4] Bacteroides.Otu0863 5.284e-04
SB21 control [3.18,6.27] Bacteroides.Otu0863 0.000e+00
SB22 patient (6.27,8.71] Bacteroides.Otu0863 7.678e-04
SB23 patient (15.3,26.4] Bacteroides.Otu0863 1.493e-02
SB24 control (8.71,15.3] Bacteroides.Otu0863 1.420e-02
SB25 control (8.71,15.3] Bacteroides.Otu0863 7.992e-02
SB26 control (6.27,8.71] Bacteroides.Otu0863 9.401e-03
SB28 patient (6.27,8.71] Bacteroides.Otu0863 3.934e-04
SB29 patient (6.27,8.71] Bacteroides.Otu0863 0.000e+00
SB3 control [3.18,6.27] Bacteroides.Otu0863 1.658e-03
SB30 patient (6.27,8.71] Bacteroides.Otu0863 2.907e-02
SB31 control (8.71,15.3] Bacteroides.Otu0863 5.201e-03
SB32 control (15.3,26.4] Bacteroides.Otu0863 1.084e-02
SB33 control (8.71,15.3] Bacteroides.Otu0863 7.925e-03
SB34 patient (15.3,26.4] Bacteroides.Otu0863 1.600e-01
SB35 patient (8.71,15.3] Bacteroides.Otu0863 3.011e-02
SB36 patient [3.18,6.27] Bacteroides.Otu0863 2.511e-02
SB38 patient (15.3,26.4] Bacteroides.Otu0863 2.756e-02
SB39 patient (8.71,15.3] Bacteroides.Otu0863 1.836e-02
SB4 patient [3.18,6.27] Bacteroides.Otu0863 1.809e-03
SB40 control [3.18,6.27] Bacteroides.Otu0863 8.925e-03
SB41 patient (6.27,8.71] Bacteroides.Otu0863 1.372e-03
SB42 patient [3.18,6.27] Bacteroides.Otu0863 2.575e-02
SB43 patient (15.3,26.4] Bacteroides.Otu0863 3.300e-03
SB44 patient [3.18,6.27] Bacteroides.Otu0863 4.201e-02
SB45 control (15.3,26.4] Bacteroides.Otu0863 0.000e+00

(1.2.1.4.6.2.4.4.1.1.1) Widget 109. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type,age.quant. Click to see HTML widget file in full window: ./1.2.1.4.6.2.4.4.1.1.1-3235605e9b8Dynamic.Pivot.Table.html

(1.2.1.4.6.2.4.4.1.1.1) Widget 110. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type,age.quant. Click to see HTML widget file in full window: ./1.2.1.4.6.2.4.4.1.1.1-323508166fbDynamic.Pivot.Table.html

(1.2.1.4.6.2.4.4.1.1.1) Table 105. Summary table. Data grouped by Sample.type,age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.4.6.2.4.4.1.1.1-323292fde9e.1.2.1.4.6.2.4.4.1.1.csv

feature Sample.type age.quant mean sd median incidence
Lachnospiraceae.Otu2512 control [3.18,6.27] 1.019e-02 1.079e-02 9.840e-03 0.7500
Lachnospiraceae.Otu2512 control (6.27,8.71] 2.201e-04 3.112e-04 2.201e-04 0.5000
Lachnospiraceae.Otu2512 control (8.71,15.3] 8.534e-03 6.844e-03 1.189e-02 1.0000
Lachnospiraceae.Otu2512 control (15.3,26.4] 8.934e-03 6.618e-03 8.686e-03 1.0000
Lachnospiraceae.Otu2512 patient [3.18,6.27] 2.390e-04 1.655e-04 2.880e-04 0.7500
Lachnospiraceae.Otu2512 patient (6.27,8.71] 3.341e-04 4.884e-04 6.640e-05 0.5000
Lachnospiraceae.Otu2512 patient (8.71,15.3] 1.893e-04 3.786e-04 0.000e+00 0.2500
Lachnospiraceae.Otu2512 patient (15.3,26.4] 1.410e-03 2.332e-03 1.732e-04 0.7778
Lachnospiracea_incertae_sedis.Otu1990 control [3.18,6.27] 4.114e-03 3.170e-03 4.393e-03 0.7500
Lachnospiracea_incertae_sedis.Otu1990 control (6.27,8.71] 3.484e-03 3.787e-03 3.484e-03 1.0000
Lachnospiracea_incertae_sedis.Otu1990 control (8.71,15.3] 3.278e-03 2.501e-03 3.094e-03 1.0000
Lachnospiracea_incertae_sedis.Otu1990 control (15.3,26.4] 3.465e-03 2.062e-03 3.561e-03 1.0000
Lachnospiracea_incertae_sedis.Otu1990 patient [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Lachnospiracea_incertae_sedis.Otu1990 patient (6.27,8.71] 6.917e-05 1.488e-04 0.000e+00 0.3333
Lachnospiracea_incertae_sedis.Otu1990 patient (8.71,15.3] 1.116e-04 2.232e-04 0.000e+00 0.2500
Lachnospiracea_incertae_sedis.Otu1990 patient (15.3,26.4] 1.472e-03 3.060e-03 1.214e-04 0.6667
Lachnospiracea_incertae_sedis.Otu0113 control [3.18,6.27] 7.854e-03 9.451e-03 4.911e-03 0.7500
Lachnospiracea_incertae_sedis.Otu0113 control (6.27,8.71] 2.469e-03 2.732e-03 2.469e-03 1.0000
Lachnospiracea_incertae_sedis.Otu0113 control (8.71,15.3] 3.715e-03 2.670e-03 3.997e-03 1.0000
Lachnospiracea_incertae_sedis.Otu0113 control (15.3,26.4] 4.189e-03 1.288e-03 4.228e-03 1.0000
Lachnospiracea_incertae_sedis.Otu0113 patient [3.18,6.27] 5.448e-04 7.767e-04 2.659e-04 0.5000
Lachnospiracea_incertae_sedis.Otu0113 patient (6.27,8.71] 8.797e-04 1.156e-03 4.360e-04 0.6667
Lachnospiracea_incertae_sedis.Otu0113 patient (8.71,15.3] 5.255e-04 6.108e-04 4.831e-04 0.5000
Lachnospiracea_incertae_sedis.Otu0113 patient (15.3,26.4] 1.420e-03 1.919e-03 3.859e-04 0.7778
Ruminococcus.Otu1859 control [3.18,6.27] 4.104e-02 4.849e-02 3.142e-02 0.7500
Ruminococcus.Otu1859 control (6.27,8.71] 1.053e-01 1.489e-01 1.053e-01 0.5000
Ruminococcus.Otu1859 control (8.71,15.3] 7.589e-03 7.333e-03 6.607e-03 0.7143
Ruminococcus.Otu1859 control (15.3,26.4] 3.190e-02 6.064e-02 1.410e-03 0.8000
Ruminococcus.Otu1859 patient [3.18,6.27] 6.227e-04 1.008e-03 1.903e-04 0.5000
Ruminococcus.Otu1859 patient (6.27,8.71] 4.560e-03 1.117e-02 0.000e+00 0.1667
Ruminococcus.Otu1859 patient (8.71,15.3] 0.000e+00 0.000e+00 0.000e+00 0.0000
Ruminococcus.Otu1859 patient (15.3,26.4] 5.567e-04 9.120e-04 0.000e+00 0.3333
Lachnospiraceae.Otu2612 control [3.18,6.27] 4.268e-03 3.217e-03 5.013e-03 0.7500
Lachnospiraceae.Otu2612 control (6.27,8.71] 1.100e-03 1.556e-03 1.100e-03 0.5000
Lachnospiraceae.Otu2612 control (8.71,15.3] 2.096e-03 2.836e-03 1.364e-03 0.8571
Lachnospiraceae.Otu2612 control (15.3,26.4] 2.164e-03 1.442e-03 1.840e-03 1.0000
Lachnospiraceae.Otu2612 patient [3.18,6.27] 4.498e-04 8.016e-04 7.597e-05 0.5000
Lachnospiraceae.Otu2612 patient (6.27,8.71] 6.398e-05 1.567e-04 0.000e+00 0.1667
Lachnospiraceae.Otu2612 patient (8.71,15.3] 2.232e-04 4.464e-04 0.000e+00 0.2500
Lachnospiraceae.Otu2612 patient (15.3,26.4] 1.132e-03 2.382e-03 1.682e-04 0.5556
Bacteroides.Otu2481 control [3.18,6.27] 5.181e-05 1.036e-04 0.000e+00 0.2500
Bacteroides.Otu2481 control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Bacteroides.Otu2481 control (8.71,15.3] 3.906e-02 1.031e-01 1.289e-04 0.5714
Bacteroides.Otu2481 control (15.3,26.4] 0.000e+00 0.000e+00 0.000e+00 0.0000
Bacteroides.Otu2481 patient [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Bacteroides.Otu2481 patient (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Bacteroides.Otu2481 patient (8.71,15.3] 0.000e+00 0.000e+00 0.000e+00 0.0000
Bacteroides.Otu2481 patient (15.3,26.4] 0.000e+00 0.000e+00 0.000e+00 0.0000
Bacteroides.Otu2375 control [3.18,6.27] 9.433e-04 1.450e-03 3.570e-04 0.5000
Bacteroides.Otu2375 control (6.27,8.71] 4.029e-04 5.698e-04 4.029e-04 0.5000
Bacteroides.Otu2375 control (8.71,15.3] 2.562e-03 2.655e-03 1.724e-03 1.0000
Bacteroides.Otu2375 control (15.3,26.4] 3.331e-04 4.055e-04 1.703e-04 0.6000
Bacteroides.Otu2375 patient [3.18,6.27] 1.452e-03 2.656e-03 1.903e-04 0.5000
Bacteroides.Otu2375 patient (6.27,8.71] 4.562e-03 4.061e-03 4.118e-03 0.8333
Bacteroides.Otu2375 patient (8.71,15.3] 1.700e-03 1.741e-03 1.628e-03 0.7500
Bacteroides.Otu2375 patient (15.3,26.4] 3.349e-03 2.499e-03 3.400e-03 1.0000
Bacteroides.Otu0006 control [3.18,6.27] 3.038e-03 4.950e-03 8.998e-04 0.5000
Bacteroides.Otu0006 control (6.27,8.71] 8.934e-03 5.417e-03 8.934e-03 1.0000
Bacteroides.Otu0006 control (8.71,15.3] 6.530e-03 8.649e-03 3.999e-03 1.0000
Bacteroides.Otu0006 control (15.3,26.4] 3.172e-03 3.713e-03 1.788e-03 0.8000
Bacteroides.Otu0006 patient [3.18,6.27] 5.043e-03 6.272e-03 3.618e-03 0.5000
Bacteroides.Otu0006 patient (6.27,8.71] 1.475e-02 1.276e-02 1.533e-02 0.8333
Bacteroides.Otu0006 patient (8.71,15.3] 5.268e-03 7.546e-03 2.305e-03 0.7500
Bacteroides.Otu0006 patient (15.3,26.4] 1.245e-02 8.204e-03 1.076e-02 1.0000
Bacteroides.Otu0001 control [3.18,6.27] 6.161e-02 7.300e-02 4.860e-02 0.7500
Bacteroides.Otu0001 control (6.27,8.71] 5.125e-02 1.147e-02 5.125e-02 1.0000
Bacteroides.Otu0001 control (8.71,15.3] 5.881e-02 4.789e-02 5.819e-02 1.0000
Bacteroides.Otu0001 control (15.3,26.4] 2.795e-02 3.302e-02 1.567e-02 0.8000
Bacteroides.Otu0001 patient [3.18,6.27] 7.799e-02 9.527e-02 5.894e-02 0.5000
Bacteroides.Otu0001 patient (6.27,8.71] 1.270e-01 9.034e-02 1.419e-01 0.8333
Bacteroides.Otu0001 patient (8.71,15.3] 1.500e-01 2.571e-01 3.261e-02 0.7500
Bacteroides.Otu0001 patient (15.3,26.4] 1.124e-01 9.265e-02 9.063e-02 1.0000
Lachnospiraceae.Otu0578 control [3.18,6.27] 3.627e-04 7.254e-04 0.000e+00 0.2500
Lachnospiraceae.Otu0578 control (6.27,8.71] 6.602e-04 9.337e-04 6.602e-04 0.5000
Lachnospiraceae.Otu0578 control (8.71,15.3] 2.505e-03 3.838e-03 7.736e-04 0.7143
Lachnospiraceae.Otu0578 control (15.3,26.4] 5.812e-03 7.370e-03 1.345e-03 0.8000
Lachnospiraceae.Otu0578 patient [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Lachnospiraceae.Otu0578 patient (6.27,8.71] 1.287e-03 3.131e-03 0.000e+00 0.3333
Lachnospiraceae.Otu0578 patient (8.71,15.3] 0.000e+00 0.000e+00 0.000e+00 0.0000
Lachnospiraceae.Otu0578 patient (15.3,26.4] 4.243e-04 5.646e-04 1.682e-04 0.5556
Clostridium_IV.Otu1864 control [3.18,6.27] 1.381e-02 1.173e-02 1.478e-02 0.7500
Clostridium_IV.Otu1864 control (6.27,8.71] 1.262e-02 1.785e-02 1.262e-02 0.5000
Clostridium_IV.Otu1864 control (8.71,15.3] 8.474e-04 1.897e-03 0.000e+00 0.4286
Clostridium_IV.Otu1864 control (15.3,26.4] 2.030e-03 3.385e-03 7.046e-04 0.8000
Clostridium_IV.Otu1864 patient [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Clostridium_IV.Otu1864 patient (6.27,8.71] 9.075e-04 1.698e-03 1.919e-04 0.5000
Clostridium_IV.Otu1864 patient (8.71,15.3] 6.696e-04 1.339e-03 0.000e+00 0.2500
Clostridium_IV.Otu1864 patient (15.3,26.4] 2.172e-03 6.314e-03 0.000e+00 0.2222
Gemmiger.Otu0907 control [3.18,6.27] 7.209e-03 5.576e-03 7.812e-03 0.7500
Gemmiger.Otu0907 control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Gemmiger.Otu0907 control (8.71,15.3] 4.447e-03 4.020e-03 3.836e-03 1.0000
Gemmiger.Otu0907 control (15.3,26.4] 8.145e-03 5.837e-03 8.825e-03 1.0000
Gemmiger.Otu0907 patient [3.18,6.27] 5.510e-04 9.122e-04 1.507e-04 0.5000
Gemmiger.Otu0907 patient (6.27,8.71] 1.844e-04 4.518e-04 0.000e+00 0.1667
Gemmiger.Otu0907 patient (8.71,15.3] 2.283e-03 4.076e-03 3.786e-04 0.5000
Gemmiger.Otu0907 patient (15.3,26.4] 2.807e-03 2.781e-03 2.152e-03 0.8889
Lachnospiracea_incertae_sedis.Otu2746 control [3.18,6.27] 1.844e-03 1.365e-03 2.238e-03 0.7500
Lachnospiracea_incertae_sedis.Otu2746 control (6.27,8.71] 8.154e-03 9.632e-03 8.154e-03 1.0000
Lachnospiracea_incertae_sedis.Otu2746 control (8.71,15.3] 2.524e-03 2.521e-03 1.578e-03 1.0000
Lachnospiracea_incertae_sedis.Otu2746 control (15.3,26.4] 2.750e-03 1.948e-03 2.632e-03 1.0000
Lachnospiracea_incertae_sedis.Otu2746 patient [3.18,6.27] 1.899e-05 3.799e-05 0.000e+00 0.2500
Lachnospiracea_incertae_sedis.Otu2746 patient (6.27,8.71] 3.158e-05 4.908e-05 0.000e+00 0.3333
Lachnospiracea_incertae_sedis.Otu2746 patient (8.71,15.3] 2.232e-04 4.464e-04 0.000e+00 0.2500
Lachnospiracea_incertae_sedis.Otu2746 patient (15.3,26.4] 1.291e-03 2.534e-03 6.071e-05 0.5556
Bifidobacterium.Otu1244 control [3.18,6.27] 4.550e-02 8.976e-02 9.326e-04 0.5000
Bifidobacterium.Otu1244 control (6.27,8.71] 1.343e-04 1.899e-04 1.343e-04 0.5000
Bifidobacterium.Otu1244 control (8.71,15.3] 1.175e-04 1.511e-04 0.000e+00 0.4286
Bifidobacterium.Otu1244 control (15.3,26.4] 5.807e-04 1.251e-03 0.000e+00 0.4000
Bifidobacterium.Otu1244 patient [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Bifidobacterium.Otu1244 patient (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Bifidobacterium.Otu1244 patient (8.71,15.3] 2.163e-03 4.114e-03 1.610e-04 0.5000
Bifidobacterium.Otu1244 patient (15.3,26.4] 0.000e+00 0.000e+00 0.000e+00 0.0000
Lachnospiracea_incertae_sedis.Otu2549 control [3.18,6.27] 2.283e-03 1.662e-03 2.598e-03 0.7500
Lachnospiracea_incertae_sedis.Otu2549 control (6.27,8.71] 1.562e-02 2.210e-02 1.562e-02 0.5000
Lachnospiracea_incertae_sedis.Otu2549 control (8.71,15.3] 1.429e-03 1.132e-03 8.606e-04 1.0000
Lachnospiracea_incertae_sedis.Otu2549 control (15.3,26.4] 1.968e-03 1.756e-03 2.214e-03 1.0000
Lachnospiracea_incertae_sedis.Otu2549 patient [3.18,6.27] 1.899e-05 3.799e-05 0.000e+00 0.2500
Lachnospiracea_incertae_sedis.Otu2549 patient (6.27,8.71] 2.633e-04 6.235e-04 0.000e+00 0.3333
Lachnospiracea_incertae_sedis.Otu2549 patient (8.71,15.3] 5.680e-04 1.136e-03 0.000e+00 0.2500
Lachnospiracea_incertae_sedis.Otu2549 patient (15.3,26.4] 1.081e-03 2.118e-03 2.598e-04 0.6667
Ruminococcus.Otu0422 control [3.18,6.27] 1.026e-02 2.051e-02 0.000e+00 0.2500
Ruminococcus.Otu0422 control (6.27,8.71] 4.096e-02 5.793e-02 4.096e-02 0.5000
Ruminococcus.Otu0422 control (8.71,15.3] 9.383e-04 1.604e-03 0.000e+00 0.2857
Ruminococcus.Otu0422 control (15.3,26.4] 1.415e-05 3.165e-05 0.000e+00 0.2000
Ruminococcus.Otu0422 patient [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Ruminococcus.Otu0422 patient (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Ruminococcus.Otu0422 patient (8.71,15.3] 0.000e+00 0.000e+00 0.000e+00 0.0000
Ruminococcus.Otu0422 patient (15.3,26.4] 0.000e+00 0.000e+00 0.000e+00 0.0000
Blautia.Otu2475 control [3.18,6.27] 5.786e-02 8.988e-02 1.797e-02 1.0000
Blautia.Otu2475 control (6.27,8.71] 5.427e-03 5.396e-03 5.427e-03 1.0000
Blautia.Otu2475 control (8.71,15.3] 6.320e-03 3.902e-03 5.673e-03 1.0000
Blautia.Otu2475 control (15.3,26.4] 1.045e-02 5.902e-03 1.084e-02 1.0000
Blautia.Otu2475 patient [3.18,6.27] 4.305e-03 5.052e-03 2.792e-03 1.0000
Blautia.Otu2475 patient (6.27,8.71] 3.372e-03 4.201e-03 1.242e-03 0.8333
Blautia.Otu2475 patient (8.71,15.3] 7.157e-03 1.266e-02 1.252e-03 0.7500
Blautia.Otu2475 patient (15.3,26.4] 9.471e-03 1.230e-02 4.630e-03 1.0000
Prevotella.Otu1987 control [3.18,6.27] 1.933e-02 3.865e-02 0.000e+00 0.2500
Prevotella.Otu1987 control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella.Otu1987 control (8.71,15.3] 4.197e-02 1.110e-01 0.000e+00 0.2857
Prevotella.Otu1987 control (15.3,26.4] 1.338e-01 1.410e-01 1.362e-01 0.6000
Prevotella.Otu1987 patient [3.18,6.27] 1.046e-02 2.093e-02 0.000e+00 0.2500
Prevotella.Otu1987 patient (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella.Otu1987 patient (8.71,15.3] 3.786e-04 7.573e-04 0.000e+00 0.2500
Prevotella.Otu1987 patient (15.3,26.4] 7.503e-02 1.540e-01 0.000e+00 0.4444
Blautia.Otu0591 control [3.18,6.27] 5.483e-03 3.341e-03 6.381e-03 1.0000
Blautia.Otu0591 control (6.27,8.71] 9.288e-04 5.538e-04 9.288e-04 1.0000
Blautia.Otu0591 control (8.71,15.3] 1.001e-03 7.099e-04 1.245e-03 0.8571
Blautia.Otu0591 control (15.3,26.4] 1.364e-03 5.841e-04 1.585e-03 1.0000
Blautia.Otu0591 patient [3.18,6.27] 8.196e-04 2.186e-04 8.327e-04 1.0000
Blautia.Otu0591 patient (6.27,8.71] 5.896e-04 6.944e-04 3.349e-04 0.6667
Blautia.Otu0591 patient (8.71,15.3] 1.676e-03 2.938e-03 3.221e-04 0.5000
Blautia.Otu0591 patient (15.3,26.4] 1.434e-03 2.551e-03 5.045e-04 0.6667
Lachnospiraceae.Otu0220 control [3.18,6.27] 3.592e-03 5.440e-03 1.336e-03 0.7500
Lachnospiraceae.Otu0220 control (6.27,8.71] 2.462e-02 2.494e-02 2.462e-02 1.0000
Lachnospiraceae.Otu0220 control (8.71,15.3] 4.484e-03 2.066e-03 4.615e-03 1.0000
Lachnospiraceae.Otu0220 control (15.3,26.4] 3.310e-03 2.655e-03 4.580e-03 1.0000
Lachnospiraceae.Otu0220 patient [3.18,6.27] 1.541e-03 1.801e-03 1.373e-03 0.5000
Lachnospiraceae.Otu0220 patient (6.27,8.71] 3.635e-03 8.193e-03 3.723e-04 0.6667
Lachnospiraceae.Otu0220 patient (8.71,15.3] 1.331e-03 1.978e-03 5.680e-04 0.5000
Lachnospiraceae.Otu0220 patient (15.3,26.4] 2.276e-03 4.505e-03 3.035e-04 0.6667
Prevotella.Otu1994 control [3.18,6.27] 5.466e-02 1.093e-01 0.000e+00 0.2500
Prevotella.Otu1994 control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella.Otu1994 control (8.71,15.3] 1.240e-02 3.280e-02 0.000e+00 0.1429
Prevotella.Otu1994 control (15.3,26.4] 3.417e-02 6.008e-02 0.000e+00 0.4000
Prevotella.Otu1994 patient [3.18,6.27] 1.608e-02 3.215e-02 0.000e+00 0.2500
Prevotella.Otu1994 patient (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella.Otu1994 patient (8.71,15.3] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella.Otu1994 patient (15.3,26.4] 1.445e-03 4.336e-03 0.000e+00 0.1111
Lachnospiraceae.Otu0875 control [3.18,6.27] 7.710e-04 5.865e-04 7.186e-04 1.0000
Lachnospiraceae.Otu0875 control (6.27,8.71] 4.006e-03 1.931e-03 4.006e-03 1.0000
Lachnospiraceae.Otu0875 control (8.71,15.3] 1.579e-03 7.870e-04 1.705e-03 1.0000
Lachnospiraceae.Otu0875 control (15.3,26.4] 2.054e-03 1.260e-03 2.013e-03 1.0000
Lachnospiraceae.Otu0875 patient [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Lachnospiraceae.Otu0875 patient (6.27,8.71] 1.626e-03 3.368e-03 1.009e-04 0.5000
Lachnospiraceae.Otu0875 patient (8.71,15.3] 4.922e-03 6.531e-03 2.597e-03 0.7500
Lachnospiraceae.Otu0875 patient (15.3,26.4] 1.033e-03 1.309e-03 4.137e-04 0.8889
Bacteroides.Otu2460 control [3.18,6.27] 1.418e-04 1.752e-04 1.036e-04 0.5000
Bacteroides.Otu2460 control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Bacteroides.Otu2460 control (8.71,15.3] 1.624e-03 1.751e-03 1.026e-03 0.8571
Bacteroides.Otu2460 control (15.3,26.4] 2.966e-04 3.731e-04 8.516e-05 0.6000
Bacteroides.Otu2460 patient [3.18,6.27] 8.160e-03 5.821e-03 8.969e-03 1.0000
Bacteroides.Otu2460 patient (6.27,8.71] 2.884e-03 2.454e-03 2.072e-03 1.0000
Bacteroides.Otu2460 patient (8.71,15.3] 1.610e-04 3.221e-04 0.000e+00 0.2500
Bacteroides.Otu2460 patient (15.3,26.4] 1.500e-03 3.393e-03 4.137e-04 0.5556
Prevotella.Otu2702 control [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella.Otu2702 control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella.Otu2702 control (8.71,15.3] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella.Otu2702 control (15.3,26.4] 8.936e-03 1.989e-02 0.000e+00 0.4000
Prevotella.Otu2702 patient [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella.Otu2702 patient (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella.Otu2702 patient (8.71,15.3] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella.Otu2702 patient (15.3,26.4] 6.471e-05 1.941e-04 0.000e+00 0.1111
Bacteroides.Otu2416 control [3.18,6.27] 8.033e-04 1.607e-03 0.000e+00 0.2500
Bacteroides.Otu2416 control (6.27,8.71] 6.715e-04 9.496e-04 6.715e-04 0.5000
Bacteroides.Otu2416 control (8.71,15.3] 5.229e-04 4.114e-04 5.157e-04 0.8571
Bacteroides.Otu2416 control (15.3,26.4] 5.978e-04 9.958e-04 7.077e-05 0.6000
Bacteroides.Otu2416 patient [3.18,6.27] 3.805e-04 7.610e-04 0.000e+00 0.2500
Bacteroides.Otu2416 patient (6.27,8.71] 2.024e-03 2.655e-03 1.045e-03 0.6667
Bacteroides.Otu2416 patient (8.71,15.3] 1.478e-03 1.512e-03 1.350e-03 0.7500
Bacteroides.Otu2416 patient (15.3,26.4] 4.440e-03 8.200e-03 1.198e-03 0.8889

(1.2.1.4.6.2.4.4.1.1.1) Figure 400. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. bar_stacked plot. Image file: plots/323f45bd61.svg.

(1.2.1.4.6.2.4.4.1.1.1) Figure 401. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/3231a1f9659.svg.

(1.2.1.4.6.2.4.4.1.1.1) Figure 402. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3233bc937c3.svg.

(1.2.1.4.6.2.4.4.1.1.1) Figure 403. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/3232364d0a1.svg.

(1.2.1.4.6.2.4.4.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.4.4.1.2.1) Figure 404. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/32351ee796.svg.

(1.2.1.4.6.2.4.4.1.2.1) Figure 405. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3237b59594.svg.

(1.2.1.4.6.2.4.4.1.2.1) Figure 406. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323738449c9.svg.

(1.2.1.4.6.2.4.4.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.2.1.4.6.2.4.4.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.4.6.2.4.4.2.1.1) Figure 407. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/323687d76fd.svg.

(1.2.1.4.6.2.4.4.2.1.1) Figure 408. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3231dfb691b.svg.

(1.2.1.4.6.2.4.4.2.1.1) Figure 409. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/3234c030c82.svg.

(1.2.1.4.6.2.4.4.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.4.6.2.4.4.2.2.1) Figure 410. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/323e755179.svg.

(1.2.1.4.6.2.4.4.2.2.1) Figure 411. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/323287cedb0.svg.

(1.2.1.4.6.2.4.4.2.2.1) Figure 412. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/32339cbfc11.svg.

Design: Rapporter Team © 2011-2014 | Backend: pander | License: AGPL3 or OSL | Styled with skeleton